SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30209
         (686 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g62290.1 68414.m07027 aspartyl protease family protein contai...    82   3e-16
At4g04460.1 68417.m00648 aspartyl protease family protein contai...    80   2e-15
At1g11910.1 68414.m01374 aspartyl protease family protein contai...    75   6e-14
At1g69100.1 68414.m07907 aspartyl protease family protein contai...    45   5e-05
At4g22050.1 68417.m03189 aspartyl protease family protein contai...    39   0.004
At2g15770.1 68415.m01808 glycine-rich protein contains a domain ...    31   0.95 
At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro...    30   1.7  
At1g30730.1 68414.m03756 FAD-binding domain-containing protein s...    30   1.7  
At1g03080.1 68414.m00282 kinase interacting family protein simil...    29   2.2  
At5g10720.1 68418.m01242 sensory transduction histidine kinase-r...    29   2.9  
At3g47850.1 68416.m05216 expressed protein                             29   2.9  
At1g05830.1 68414.m00610 trithorax protein, putative / PHD finge...    29   2.9  
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu...    29   3.8  
At3g56590.1 68416.m06293 hydroxyproline-rich glycoprotein family...    29   3.8  
At1g64350.1 68414.m07292 transducin family protein / WD-40 repea...    29   3.8  
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30...    28   5.0  
At3g08670.1 68416.m01007 expressed protein                             28   6.7  
At4g19390.1 68417.m02854 expressed protein                             27   8.8  
At3g08680.2 68416.m01009 leucine-rich repeat transmembrane prote...    27   8.8  
At3g08680.1 68416.m01008 leucine-rich repeat transmembrane prote...    27   8.8  
At1g06820.1 68414.m00727 carotenoid isomerase, putative similar ...    27   8.8  

>At1g62290.1 68414.m07027 aspartyl protease family protein contains
           Pfam profiles: PF00026 eukaryotic aspartyl protease,
           PF03489 surfactant protein B, PF05184 saposin-like type
           B, region 1
          Length = 513

 Score = 82.2 bits (194), Expect = 3e-16
 Identities = 40/84 (47%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
 Frame = +2

Query: 2   EAVSXPGLAFVAAKFDGILGMAFSTIAVDXVTPVFDNMVAQGLV-QPVFSFYLNXXPGAT 178
           E  S PGL F+ AKFDG+LG+ F  IAV   TPV+ NM+ QGL+ +PVFSF+LN  P + 
Sbjct: 179 ETTSEPGLTFLVAKFDGLLGLGFQEIAVGNATPVWYNMLKQGLIKRPVFSFWLNRDPKSE 238

Query: 179 TXXXXXXXXSDPAHYRGDLVRVPL 250
                     DP H+RG+   VP+
Sbjct: 239 EGGEIVFGGVDPKHFRGEHTFVPV 262



 Score = 77.4 bits (182), Expect = 8e-15
 Identities = 33/58 (56%), Positives = 42/58 (72%)
 Frame = +3

Query: 510 DYVLRVAQFGHTVCLXGFMALDVPKPMGPLWILGDVFIGKYYTEFRRGERQLGFAAAV 683
           +YVL++ +     C+ GF ALD+P P GPLWILGDVF+GKY+T F  G  Q+GFA AV
Sbjct: 456 EYVLKIGEGPVAQCISGFTALDIPPPRGPLWILGDVFMGKYHTVFDFGNEQVGFAEAV 513



 Score = 58.8 bits (136), Expect = 3e-09
 Identities = 26/57 (45%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
 Frame = +1

Query: 262 YWEFHMDSVNV--NASRFCXQGCSAIADTGTSLIAGPSKEVEALNAAVGATAIAFGQ 426
           YW+F M  V +   ++ +C  GCSAIAD+GTSL+AGP+  V  +N A+GA+ +   Q
Sbjct: 267 YWQFDMGEVLIAGESTGYCGSGCSAIADSGTSLLAGPTAVVAMINKAIGASGVVSQQ 323



 Score = 31.1 bits (67), Expect = 0.72
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 421 GQYVVDCSLIPHLPRVTFTIAGNDFTL 501
           G+  VDCS +  +P V+FTI G  F L
Sbjct: 426 GESAVDCSQLSKMPTVSFTIGGKVFDL 452


>At4g04460.1 68417.m00648 aspartyl protease family protein contains
           Pfam profiles: PF00026 eukaryotic aspartyl protease,
           PF03489 surfactant protein B, PF05184 saposin-like type
           B, region 1
          Length = 508

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 43/101 (42%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
 Frame = +2

Query: 2   EAVSXPGLAFVAAKFDGILGMAFSTIAVDXVTPVFDNMVAQGLV-QPVFSFYLNXXPGAT 178
           EA S PG+ F+ AKFDGILG+ F  I+V   TPV+ NMV +GLV +P+FSF+LN  P   
Sbjct: 177 EATSEPGITFLLAKFDGILGLGFKEISVGNSTPVWYNMVEKGLVKEPIFSFWLNRNPKDP 236

Query: 179 TXXXXXXXXSDPAHYRGDLVRVPLLRTRTGSSTWTLSMSTL 301
                     DP H++G+   VP+    T    W   M  L
Sbjct: 237 EGGEIVFGGVDPKHFKGEHTFVPV----THKGYWQFDMGDL 273



 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 26/57 (45%), Positives = 39/57 (68%)
 Frame = +3

Query: 510 DYVLRVAQFGHTVCLXGFMALDVPKPMGPLWILGDVFIGKYYTEFRRGERQLGFAAA 680
           DY+ ++ +   + C  GF A+D+  P GPLWILGD+F+G Y+T F  G+ ++GFA A
Sbjct: 451 DYIFKIGEGVESQCTSGFTAMDIAPPRGPLWILGDIFMGPYHTVFDYGKGRVGFAKA 507



 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 24/53 (45%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
 Frame = +1

Query: 262 YWEFHMDSVNV--NASRFCXQGCSAIADTGTSLIAGPSKEVEALNAAVGATAI 414
           YW+F M  + +    + +C +GCSAIAD+GTSL+ GPS  +  +N A+GA  I
Sbjct: 265 YWQFDMGDLQIAGKPTGYCAKGCSAIADSGTSLLTGPSTVITMINHAIGAQGI 317



 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 424 QYVVDCSLIPHLPRVTFTIAGNDFTL 501
           Q  VDC  +  +P VTF+I G  F L
Sbjct: 422 QSAVDCGRVSSMPIVTFSIGGRSFDL 447


>At1g11910.1 68414.m01374 aspartyl protease family protein contains
           Pfam profiles: PF00026 eukaryotic aspartyl protease,
           PF03489 surfactant protein B, PF05184 saposin-like type
           B, region 1
          Length = 506

 Score = 74.5 bits (175), Expect = 6e-14
 Identities = 37/84 (44%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
 Frame = +2

Query: 2   EAVSXPGLAFVAAKFDGILGMAFSTIAVDXVTPVFDNMVAQGLV-QPVFSFYLNXXPGAT 178
           EA   PG+ FV AKFDGILG+ F  I+V    PV+ NM+ QGL+ +PVFSF+LN      
Sbjct: 172 EATKEPGITFVVAKFDGILGLGFQEISVGKAAPVWYNMLKQGLIKEPVFSFWLNRNADEE 231

Query: 179 TXXXXXXXXSDPAHYRGDLVRVPL 250
                     DP H++G    VP+
Sbjct: 232 EGGELVFGGVDPNHFKGKHTYVPV 255



 Score = 74.1 bits (174), Expect = 8e-14
 Identities = 33/57 (57%), Positives = 41/57 (71%)
 Frame = +3

Query: 510 DYVLRVAQFGHTVCLXGFMALDVPKPMGPLWILGDVFIGKYYTEFRRGERQLGFAAA 680
           +YVL+V +     C+ GF+ALDV  P GPLWILGDVF+GKY+T F  G  Q+GFA A
Sbjct: 449 EYVLKVGEGPVAQCISGFIALDVAPPRGPLWILGDVFMGKYHTVFDFGNEQVGFAEA 505



 Score = 58.0 bits (134), Expect = 5e-09
 Identities = 26/57 (45%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
 Frame = +1

Query: 262 YWEFHMDSVNVNASR--FCXQGCSAIADTGTSLIAGPSKEVEALNAAVGATAIAFGQ 426
           YW+F M  V +  +   FC  GCSAIAD+GTSL+AGP+  +  +N A+GA  +   Q
Sbjct: 260 YWQFDMGDVLIGGAPTGFCESGCSAIADSGTSLLAGPTTIITMINHAIGAAGVVSQQ 316


>At1g69100.1 68414.m07907 aspartyl protease family protein contains
           Pfam profile: PF00026 eukaryotic aspartyl protease
          Length = 343

 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
 Frame = +1

Query: 256 DTYWEFHMDSVNVN---ASRFCXQ-GCSAIADTGTSLIAGPSKEVEALNAAVGATAIAFG 423
           D  W+  M  + +N   A  FC    C+A+ D+G++ I GP + V  +   +GAT +   
Sbjct: 203 DDRWKIKMSKIYINGKPAINFCDDVECTAMVDSGSTDIFGPDEAVGKIYKEIGATKV--- 259

Query: 424 QYVVDCSLIPHLPRVTFTIAGNDFTL 501
             ++ C   P LP + F I G    L
Sbjct: 260 --IIRCEQFPALPDIYFEIGGKHLRL 283


>At4g22050.1 68417.m03189 aspartyl protease family protein contains
           Pfam profile: PF00026 eukaryotic aspartyl protease
          Length = 354

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 22/67 (32%), Positives = 31/67 (46%)
 Frame = +1

Query: 301 SRFCXQGCSAIADTGTSLIAGPSKEVEALNAAVGATAIAFGQYVVDCSLIPHLPRVTFTI 480
           +  C  GC AI D+G+S I  P    + ++  +G           +C+    LP VTFTI
Sbjct: 239 TNICSSGCKAIVDSGSSNINVPMDSADEIHRYIGVEP--------NCNNFETLPDVTFTI 290

Query: 481 AGNDFTL 501
            G  F L
Sbjct: 291 GGKAFVL 297



 Score = 33.5 bits (73), Expect = 0.13
 Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
 Frame = +2

Query: 29  FVAAKFDGILGMAFSTIAVDXVTPVFDNMVAQG-LVQPVFSFYLN--XXPGATTXXXXXX 199
           F    FDGILG+ F T  ++  T V+ +MV QG + + VFS +L      G         
Sbjct: 145 FKKMPFDGILGLRF-TDPLNFGTSVWHSMVFQGKIAKNVFSIWLRRFSNSGEINGGEVVF 203

Query: 200 XXSDPAHYRGD 232
               PAH+ GD
Sbjct: 204 GGIIPAHFSGD 214


>At2g15770.1 68415.m01808 glycine-rich protein contains a domain
           related to blue copper-binding protein; similar to
           Stellacyanin (SP:P00302) {Rhus vernicifera}
          Length = 301

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = +1

Query: 505 GTTTCSGWHNSGTRCACXXSWRWTCRSPWARCGSWGTCSSASTTRSFDAGNASSGSRP 678
           G+   SG  +S        SW W+ +S W+   SWG+  + S +   D+G+      P
Sbjct: 88  GSNRGSGSGSSTNPDGSRRSWNWSLKSGWS--WSWGSNDNDSNSSGSDSGSGLDRETP 143


>At5g53870.1 68418.m06701 plastocyanin-like domain-containing
           protein contains similarity to SP|Q02917 Early nodulin
           55-2 precursor {Glycine max}; PF02298: Plastocyanin-like
           domain
          Length = 370

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 24/89 (26%), Positives = 34/89 (38%), Gaps = 2/89 (2%)
 Frame = +2

Query: 404 PRPSPSGSTSWTAASYRTCRESPLPSPGTTSRSRARL--RAPGGTIRAHGVPVRXHGAGR 577
           P  SPS +TS + A+     +SP P   + S S A     +P  T          H    
Sbjct: 192 PALSPSHATSHSPATPSPSPKSPSPVSHSPSHSPAHTPSHSPAHTPSHSPAHAPSHSPAH 251

Query: 578 AEAHGPAVDPGGRVHRQVLHGVSTRGTPA 664
           A +H PA  P         H  +T  +P+
Sbjct: 252 APSHSPAHAPSHSPAHSPSHSPATPKSPS 280


>At1g30730.1 68414.m03756 FAD-binding domain-containing protein
           similar to SP|P30986 reticuline oxidase precursor
           (Berberine-bridge-forming enzyme) (BBE)
           (Tetrahydroprotoberberine synthase) [Eschscholzia
           californica]; contains PF01565 FAD binding domain
          Length = 526

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
 Frame = +3

Query: 447 HTAP--AASHLYHRRERLHARGHDY----VLRVAQFGHTVCLXGFMALDVPKPMGPLWIL 608
           H +P  A + L+  + R+ + GHD+        A F   + L  F ++DV    G  W+ 
Sbjct: 87  HISPVLACARLFPVQVRIRSGGHDFEGLSYTSTAPF-FLIDLLNFKSVDVNLTEGTAWVD 145

Query: 609 GDVFIGKYYTEFRRGERQLGFAAAV 683
               +G+ Y +       LGF A +
Sbjct: 146 TGATLGELYYKIAEKSNVLGFPAGL 170


>At1g03080.1 68414.m00282 kinase interacting family protein similar to
            kinase interacting protein 1 (GI:13936326) [Petunia
            integrifolia]
          Length = 1744

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -3

Query: 543  CARIVPPGARSRALEREVVPGDGKGDSRQVRYEAAVHDVL 424
            C +I+  G     ++ E++PG G GD    R +  +HD+L
Sbjct: 935  CIKILRTGIYQVLMKLEIIPGIGSGDENS-RDQRNMHDIL 973


>At5g10720.1 68418.m01242 sensory transduction histidine
           kinase-related similar to Sensor protein rcsC (Capsular
           synthesis regulator component C) (SP:Q56128) {Salmonella
           typhi}; sensory transduction histidine kinase slr1759,
           Synechocystis sp., PIR:S75142
          Length = 950

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
 Frame = -1

Query: 449 MRLQSTTYCPKAMA--VAPTAA--LRASTSLEGPAISDVPVSAMAE 324
           MRL++T + P+ +   V  TAA  L+ S +LEG    DVP+  + +
Sbjct: 429 MRLEATKFRPREVVKHVLQTAAASLKKSLTLEGNIADDVPIEVVGD 474


>At3g47850.1 68416.m05216 expressed protein
          Length = 322

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
 Frame = +2

Query: 383 PSTRRWAP-----RPSPSGSTSWTAASYRTCRESPLPSPGTTSRSRARLRAP 523
           P T RW+P     +P P+ + S +  +Y     SP    GT+    +RL++P
Sbjct: 269 PHTSRWSPLVGPSQPGPAVTVSASGTNYIASSPSPAGFGGTSVFRESRLQSP 320


>At1g05830.1 68414.m00610 trithorax protein, putative / PHD finger
           family protein / SET domain-containing protein similar
           to trithorax-like protein 1 [Arabidopsis thaliana]
           GI:12659210; contains Pfam domain, PF00628: PHD-finger
           and PF00856: SET domain
          Length = 1056

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 438 LQPHTAPAASHLYHRRERLHARGHDYVLRVA 530
           LQPH  P   H+Y RR+R   R  +  L +A
Sbjct: 74  LQPHRRPEIVHVYCRRKRRRRRRRESFLELA 104


>At4g35785.1 68417.m05082 transformer serine/arginine-rich
           ribonucleoprotein, putative similar to transformer-SR
           ribonucleoprotein [Nicotiana tabacum]
           gi|1781299|emb|CAA70700
          Length = 140

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +2

Query: 494 SRSRARLRAPGGTIRAHGVPVRXHGAGRAEAHGPAVD-PGGRVHRQVLHGVSTRGT 658
           SRSR RLR+   ++     P R  G  R+ + G  V+ PG  ++   + G+STR T
Sbjct: 31  SRSRPRLRSRSRSLPRPVSPSRSRGRSRSRSRGSEVENPGTTLY---VTGLSTRVT 83


>At3g56590.1 68416.m06293 hydroxyproline-rich glycoprotein family
           protein 
          Length = 477

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 21/77 (27%), Positives = 29/77 (37%)
 Frame = +2

Query: 401 APRPSPSGSTSWTAASYRTCRESPLPSPGTTSRSRARLRAPGGTIRAHGVPVRXHGAGRA 580
           AP PS S  T   A +    + SPLP P        + R  G +   H          R+
Sbjct: 348 APEPSLSPPTKGFAPASAPTKHSPLP-PRNPPCPYEQRRPKGNSALNHHTAPPTPAPHRS 406

Query: 581 EAHGPAVDPGGRVHRQV 631
           + H PA +P    H  +
Sbjct: 407 QPHPPAPNPAPPRHHAI 423


>At1g64350.1 68414.m07292 transducin family protein / WD-40 repeat
           family protein contains 5 WD-40 repeats (PF00400);
           similar to nuclear pore protein SEH1 (SP:P53011)
           [Saccharomyces cerevisiae]
          Length = 326

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 496 TLEGTTTCSGWHNSGTRCA 552
           TL+  TTCS W+ SG R A
Sbjct: 7   TLDSGTTCSSWNQSGDRLA 25


>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
           nearly identical to SC35-like splicing factor SCL30, 30
           kD [Arabidopsis thaliana] GI:9843657;
           Serine/arginine-rich protein/putative splicing factor,
           Arabidopdis thaliana, EMBL:AF099940; contains Pfam
           profile PF00076: RNA recognition motif. (a.k.a. RRM,
           RBD, or RNP domain)
          Length = 262

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/39 (41%), Positives = 18/39 (46%)
 Frame = +1

Query: 4   GRVGXRACLRGRQVRRDPRDGLQHYRSGXCDPGVRQHGG 120
           GR   R+  R R  RR P D    YRS    P  R+ GG
Sbjct: 153 GRSRSRSISRSRSPRR-PSDSRSRYRSRSYSPAPRRRGG 190


>At3g08670.1 68416.m01007 expressed protein 
          Length = 567

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +2

Query: 380 KPSTRRWAP-RPSPSGSTSWTAASYRTCRESPLPSPGTTSRSRARLRAPGGTIR 538
           +P++R   P R SPS STS +A S  T       S G T  S +R  +PG  +R
Sbjct: 264 RPNSRPSTPTRRSPS-STSLSATSGPTISGGRAASNGRTGPSLSRPSSPGPRVR 316


>At4g19390.1 68417.m02854 expressed protein
          Length = 273

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 541 TRCACXXSWRWTCRSPWARCGSWGTCSSASTTRS 642
           T+      W W+ RSP  R  S  T +SAST+ S
Sbjct: 51  TKTITSSDWSWSYRSP-GRLASASTSTSASTSTS 83


>At3g08680.2 68416.m01009 leucine-rich repeat transmembrane protein
           kinase, putative contains Pfam profile: PF00069
           Eukaryotic protein kinase domain, PF00560 leucine Rich
           Repeat (5 copies)
          Length = 640

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = -1

Query: 509 VPSSVKSFPA-MVKVTRGRCGMRLQSTTYCPKAMAVAPTAALRASTSLEGPAISDV 345
           VPSSVKSFPA   +     CG  L   T CP+    AP+ +   +T  EGP  +++
Sbjct: 199 VPSSVKSFPASSFQGNSLLCGAPL---TPCPE-NTTAPSPS--PTTPTEGPGTTNI 248


>At3g08680.1 68416.m01008 leucine-rich repeat transmembrane protein
           kinase, putative contains Pfam profile: PF00069
           Eukaryotic protein kinase domain, PF00560 leucine Rich
           Repeat (5 copies)
          Length = 640

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = -1

Query: 509 VPSSVKSFPA-MVKVTRGRCGMRLQSTTYCPKAMAVAPTAALRASTSLEGPAISDV 345
           VPSSVKSFPA   +     CG  L   T CP+    AP+ +   +T  EGP  +++
Sbjct: 199 VPSSVKSFPASSFQGNSLLCGAPL---TPCPE-NTTAPSPS--PTTPTEGPGTTNI 248


>At1g06820.1 68414.m00727 carotenoid isomerase, putative similar to
           carotenoid isomerase from Lycopersicon esculentum
           [gi:19550437]; contains Pfam profile: PF02032 Phytoene
           dehydrogenase related enzyme
          Length = 595

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +2

Query: 50  GILGMAFSTIAVDXVTPVFDN-MVAQGLVQPVFS 148
           G+LGM F+T A+D +  V D+    QG++   FS
Sbjct: 526 GLLGMPFNTTAIDGLYCVGDSCFPGQGVIAVAFS 559


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,792,413
Number of Sequences: 28952
Number of extensions: 278370
Number of successful extensions: 980
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -