BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= heS30209 (686 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g62290.1 68414.m07027 aspartyl protease family protein contai... 82 3e-16 At4g04460.1 68417.m00648 aspartyl protease family protein contai... 80 2e-15 At1g11910.1 68414.m01374 aspartyl protease family protein contai... 75 6e-14 At1g69100.1 68414.m07907 aspartyl protease family protein contai... 45 5e-05 At4g22050.1 68417.m03189 aspartyl protease family protein contai... 39 0.004 At2g15770.1 68415.m01808 glycine-rich protein contains a domain ... 31 0.95 At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro... 30 1.7 At1g30730.1 68414.m03756 FAD-binding domain-containing protein s... 30 1.7 At1g03080.1 68414.m00282 kinase interacting family protein simil... 29 2.2 At5g10720.1 68418.m01242 sensory transduction histidine kinase-r... 29 2.9 At3g47850.1 68416.m05216 expressed protein 29 2.9 At1g05830.1 68414.m00610 trithorax protein, putative / PHD finge... 29 2.9 At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 29 3.8 At3g56590.1 68416.m06293 hydroxyproline-rich glycoprotein family... 29 3.8 At1g64350.1 68414.m07292 transducin family protein / WD-40 repea... 29 3.8 At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 28 5.0 At3g08670.1 68416.m01007 expressed protein 28 6.7 At4g19390.1 68417.m02854 expressed protein 27 8.8 At3g08680.2 68416.m01009 leucine-rich repeat transmembrane prote... 27 8.8 At3g08680.1 68416.m01008 leucine-rich repeat transmembrane prote... 27 8.8 At1g06820.1 68414.m00727 carotenoid isomerase, putative similar ... 27 8.8 >At1g62290.1 68414.m07027 aspartyl protease family protein contains Pfam profiles: PF00026 eukaryotic aspartyl protease, PF03489 surfactant protein B, PF05184 saposin-like type B, region 1 Length = 513 Score = 82.2 bits (194), Expect = 3e-16 Identities = 40/84 (47%), Positives = 52/84 (61%), Gaps = 1/84 (1%) Frame = +2 Query: 2 EAVSXPGLAFVAAKFDGILGMAFSTIAVDXVTPVFDNMVAQGLV-QPVFSFYLNXXPGAT 178 E S PGL F+ AKFDG+LG+ F IAV TPV+ NM+ QGL+ +PVFSF+LN P + Sbjct: 179 ETTSEPGLTFLVAKFDGLLGLGFQEIAVGNATPVWYNMLKQGLIKRPVFSFWLNRDPKSE 238 Query: 179 TXXXXXXXXSDPAHYRGDLVRVPL 250 DP H+RG+ VP+ Sbjct: 239 EGGEIVFGGVDPKHFRGEHTFVPV 262 Score = 77.4 bits (182), Expect = 8e-15 Identities = 33/58 (56%), Positives = 42/58 (72%) Frame = +3 Query: 510 DYVLRVAQFGHTVCLXGFMALDVPKPMGPLWILGDVFIGKYYTEFRRGERQLGFAAAV 683 +YVL++ + C+ GF ALD+P P GPLWILGDVF+GKY+T F G Q+GFA AV Sbjct: 456 EYVLKIGEGPVAQCISGFTALDIPPPRGPLWILGDVFMGKYHTVFDFGNEQVGFAEAV 513 Score = 58.8 bits (136), Expect = 3e-09 Identities = 26/57 (45%), Positives = 38/57 (66%), Gaps = 2/57 (3%) Frame = +1 Query: 262 YWEFHMDSVNV--NASRFCXQGCSAIADTGTSLIAGPSKEVEALNAAVGATAIAFGQ 426 YW+F M V + ++ +C GCSAIAD+GTSL+AGP+ V +N A+GA+ + Q Sbjct: 267 YWQFDMGEVLIAGESTGYCGSGCSAIADSGTSLLAGPTAVVAMINKAIGASGVVSQQ 323 Score = 31.1 bits (67), Expect = 0.72 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = +1 Query: 421 GQYVVDCSLIPHLPRVTFTIAGNDFTL 501 G+ VDCS + +P V+FTI G F L Sbjct: 426 GESAVDCSQLSKMPTVSFTIGGKVFDL 452 >At4g04460.1 68417.m00648 aspartyl protease family protein contains Pfam profiles: PF00026 eukaryotic aspartyl protease, PF03489 surfactant protein B, PF05184 saposin-like type B, region 1 Length = 508 Score = 79.8 bits (188), Expect = 2e-15 Identities = 43/101 (42%), Positives = 56/101 (55%), Gaps = 1/101 (0%) Frame = +2 Query: 2 EAVSXPGLAFVAAKFDGILGMAFSTIAVDXVTPVFDNMVAQGLV-QPVFSFYLNXXPGAT 178 EA S PG+ F+ AKFDGILG+ F I+V TPV+ NMV +GLV +P+FSF+LN P Sbjct: 177 EATSEPGITFLLAKFDGILGLGFKEISVGNSTPVWYNMVEKGLVKEPIFSFWLNRNPKDP 236 Query: 179 TXXXXXXXXSDPAHYRGDLVRVPLLRTRTGSSTWTLSMSTL 301 DP H++G+ VP+ T W M L Sbjct: 237 EGGEIVFGGVDPKHFKGEHTFVPV----THKGYWQFDMGDL 273 Score = 66.9 bits (156), Expect = 1e-11 Identities = 26/57 (45%), Positives = 39/57 (68%) Frame = +3 Query: 510 DYVLRVAQFGHTVCLXGFMALDVPKPMGPLWILGDVFIGKYYTEFRRGERQLGFAAA 680 DY+ ++ + + C GF A+D+ P GPLWILGD+F+G Y+T F G+ ++GFA A Sbjct: 451 DYIFKIGEGVESQCTSGFTAMDIAPPRGPLWILGDIFMGPYHTVFDYGKGRVGFAKA 507 Score = 56.4 bits (130), Expect = 2e-08 Identities = 24/53 (45%), Positives = 35/53 (66%), Gaps = 2/53 (3%) Frame = +1 Query: 262 YWEFHMDSVNV--NASRFCXQGCSAIADTGTSLIAGPSKEVEALNAAVGATAI 414 YW+F M + + + +C +GCSAIAD+GTSL+ GPS + +N A+GA I Sbjct: 265 YWQFDMGDLQIAGKPTGYCAKGCSAIADSGTSLLTGPSTVITMINHAIGAQGI 317 Score = 29.1 bits (62), Expect = 2.9 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = +1 Query: 424 QYVVDCSLIPHLPRVTFTIAGNDFTL 501 Q VDC + +P VTF+I G F L Sbjct: 422 QSAVDCGRVSSMPIVTFSIGGRSFDL 447 >At1g11910.1 68414.m01374 aspartyl protease family protein contains Pfam profiles: PF00026 eukaryotic aspartyl protease, PF03489 surfactant protein B, PF05184 saposin-like type B, region 1 Length = 506 Score = 74.5 bits (175), Expect = 6e-14 Identities = 37/84 (44%), Positives = 48/84 (57%), Gaps = 1/84 (1%) Frame = +2 Query: 2 EAVSXPGLAFVAAKFDGILGMAFSTIAVDXVTPVFDNMVAQGLV-QPVFSFYLNXXPGAT 178 EA PG+ FV AKFDGILG+ F I+V PV+ NM+ QGL+ +PVFSF+LN Sbjct: 172 EATKEPGITFVVAKFDGILGLGFQEISVGKAAPVWYNMLKQGLIKEPVFSFWLNRNADEE 231 Query: 179 TXXXXXXXXSDPAHYRGDLVRVPL 250 DP H++G VP+ Sbjct: 232 EGGELVFGGVDPNHFKGKHTYVPV 255 Score = 74.1 bits (174), Expect = 8e-14 Identities = 33/57 (57%), Positives = 41/57 (71%) Frame = +3 Query: 510 DYVLRVAQFGHTVCLXGFMALDVPKPMGPLWILGDVFIGKYYTEFRRGERQLGFAAA 680 +YVL+V + C+ GF+ALDV P GPLWILGDVF+GKY+T F G Q+GFA A Sbjct: 449 EYVLKVGEGPVAQCISGFIALDVAPPRGPLWILGDVFMGKYHTVFDFGNEQVGFAEA 505 Score = 58.0 bits (134), Expect = 5e-09 Identities = 26/57 (45%), Positives = 36/57 (63%), Gaps = 2/57 (3%) Frame = +1 Query: 262 YWEFHMDSVNVNASR--FCXQGCSAIADTGTSLIAGPSKEVEALNAAVGATAIAFGQ 426 YW+F M V + + FC GCSAIAD+GTSL+AGP+ + +N A+GA + Q Sbjct: 260 YWQFDMGDVLIGGAPTGFCESGCSAIADSGTSLLAGPTTIITMINHAIGAAGVVSQQ 316 >At1g69100.1 68414.m07907 aspartyl protease family protein contains Pfam profile: PF00026 eukaryotic aspartyl protease Length = 343 Score = 44.8 bits (101), Expect = 5e-05 Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 4/86 (4%) Frame = +1 Query: 256 DTYWEFHMDSVNVN---ASRFCXQ-GCSAIADTGTSLIAGPSKEVEALNAAVGATAIAFG 423 D W+ M + +N A FC C+A+ D+G++ I GP + V + +GAT + Sbjct: 203 DDRWKIKMSKIYINGKPAINFCDDVECTAMVDSGSTDIFGPDEAVGKIYKEIGATKV--- 259 Query: 424 QYVVDCSLIPHLPRVTFTIAGNDFTL 501 ++ C P LP + F I G L Sbjct: 260 --IIRCEQFPALPDIYFEIGGKHLRL 283 >At4g22050.1 68417.m03189 aspartyl protease family protein contains Pfam profile: PF00026 eukaryotic aspartyl protease Length = 354 Score = 38.7 bits (86), Expect = 0.004 Identities = 22/67 (32%), Positives = 31/67 (46%) Frame = +1 Query: 301 SRFCXQGCSAIADTGTSLIAGPSKEVEALNAAVGATAIAFGQYVVDCSLIPHLPRVTFTI 480 + C GC AI D+G+S I P + ++ +G +C+ LP VTFTI Sbjct: 239 TNICSSGCKAIVDSGSSNINVPMDSADEIHRYIGVEP--------NCNNFETLPDVTFTI 290 Query: 481 AGNDFTL 501 G F L Sbjct: 291 GGKAFVL 297 Score = 33.5 bits (73), Expect = 0.13 Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 3/71 (4%) Frame = +2 Query: 29 FVAAKFDGILGMAFSTIAVDXVTPVFDNMVAQG-LVQPVFSFYLN--XXPGATTXXXXXX 199 F FDGILG+ F T ++ T V+ +MV QG + + VFS +L G Sbjct: 145 FKKMPFDGILGLRF-TDPLNFGTSVWHSMVFQGKIAKNVFSIWLRRFSNSGEINGGEVVF 203 Query: 200 XXSDPAHYRGD 232 PAH+ GD Sbjct: 204 GGIIPAHFSGD 214 >At2g15770.1 68415.m01808 glycine-rich protein contains a domain related to blue copper-binding protein; similar to Stellacyanin (SP:P00302) {Rhus vernicifera} Length = 301 Score = 30.7 bits (66), Expect = 0.95 Identities = 16/58 (27%), Positives = 26/58 (44%) Frame = +1 Query: 505 GTTTCSGWHNSGTRCACXXSWRWTCRSPWARCGSWGTCSSASTTRSFDAGNASSGSRP 678 G+ SG +S SW W+ +S W+ SWG+ + S + D+G+ P Sbjct: 88 GSNRGSGSGSSTNPDGSRRSWNWSLKSGWS--WSWGSNDNDSNSSGSDSGSGLDRETP 143 >At5g53870.1 68418.m06701 plastocyanin-like domain-containing protein contains similarity to SP|Q02917 Early nodulin 55-2 precursor {Glycine max}; PF02298: Plastocyanin-like domain Length = 370 Score = 29.9 bits (64), Expect = 1.7 Identities = 24/89 (26%), Positives = 34/89 (38%), Gaps = 2/89 (2%) Frame = +2 Query: 404 PRPSPSGSTSWTAASYRTCRESPLPSPGTTSRSRARL--RAPGGTIRAHGVPVRXHGAGR 577 P SPS +TS + A+ +SP P + S S A +P T H Sbjct: 192 PALSPSHATSHSPATPSPSPKSPSPVSHSPSHSPAHTPSHSPAHTPSHSPAHAPSHSPAH 251 Query: 578 AEAHGPAVDPGGRVHRQVLHGVSTRGTPA 664 A +H PA P H +T +P+ Sbjct: 252 APSHSPAHAPSHSPAHSPSHSPATPKSPS 280 >At1g30730.1 68414.m03756 FAD-binding domain-containing protein similar to SP|P30986 reticuline oxidase precursor (Berberine-bridge-forming enzyme) (BBE) (Tetrahydroprotoberberine synthase) [Eschscholzia californica]; contains PF01565 FAD binding domain Length = 526 Score = 29.9 bits (64), Expect = 1.7 Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 6/85 (7%) Frame = +3 Query: 447 HTAP--AASHLYHRRERLHARGHDY----VLRVAQFGHTVCLXGFMALDVPKPMGPLWIL 608 H +P A + L+ + R+ + GHD+ A F + L F ++DV G W+ Sbjct: 87 HISPVLACARLFPVQVRIRSGGHDFEGLSYTSTAPF-FLIDLLNFKSVDVNLTEGTAWVD 145 Query: 609 GDVFIGKYYTEFRRGERQLGFAAAV 683 +G+ Y + LGF A + Sbjct: 146 TGATLGELYYKIAEKSNVLGFPAGL 170 >At1g03080.1 68414.m00282 kinase interacting family protein similar to kinase interacting protein 1 (GI:13936326) [Petunia integrifolia] Length = 1744 Score = 29.5 bits (63), Expect = 2.2 Identities = 13/40 (32%), Positives = 22/40 (55%) Frame = -3 Query: 543 CARIVPPGARSRALEREVVPGDGKGDSRQVRYEAAVHDVL 424 C +I+ G ++ E++PG G GD R + +HD+L Sbjct: 935 CIKILRTGIYQVLMKLEIIPGIGSGDENS-RDQRNMHDIL 973 >At5g10720.1 68418.m01242 sensory transduction histidine kinase-related similar to Sensor protein rcsC (Capsular synthesis regulator component C) (SP:Q56128) {Salmonella typhi}; sensory transduction histidine kinase slr1759, Synechocystis sp., PIR:S75142 Length = 950 Score = 29.1 bits (62), Expect = 2.9 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 4/46 (8%) Frame = -1 Query: 449 MRLQSTTYCPKAMA--VAPTAA--LRASTSLEGPAISDVPVSAMAE 324 MRL++T + P+ + V TAA L+ S +LEG DVP+ + + Sbjct: 429 MRLEATKFRPREVVKHVLQTAAASLKKSLTLEGNIADDVPIEVVGD 474 >At3g47850.1 68416.m05216 expressed protein Length = 322 Score = 29.1 bits (62), Expect = 2.9 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 5/52 (9%) Frame = +2 Query: 383 PSTRRWAP-----RPSPSGSTSWTAASYRTCRESPLPSPGTTSRSRARLRAP 523 P T RW+P +P P+ + S + +Y SP GT+ +RL++P Sbjct: 269 PHTSRWSPLVGPSQPGPAVTVSASGTNYIASSPSPAGFGGTSVFRESRLQSP 320 >At1g05830.1 68414.m00610 trithorax protein, putative / PHD finger family protein / SET domain-containing protein similar to trithorax-like protein 1 [Arabidopsis thaliana] GI:12659210; contains Pfam domain, PF00628: PHD-finger and PF00856: SET domain Length = 1056 Score = 29.1 bits (62), Expect = 2.9 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = +3 Query: 438 LQPHTAPAASHLYHRRERLHARGHDYVLRVA 530 LQPH P H+Y RR+R R + L +A Sbjct: 74 LQPHRRPEIVHVYCRRKRRRRRRRESFLELA 104 >At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonucleoprotein, putative similar to transformer-SR ribonucleoprotein [Nicotiana tabacum] gi|1781299|emb|CAA70700 Length = 140 Score = 28.7 bits (61), Expect = 3.8 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Frame = +2 Query: 494 SRSRARLRAPGGTIRAHGVPVRXHGAGRAEAHGPAVD-PGGRVHRQVLHGVSTRGT 658 SRSR RLR+ ++ P R G R+ + G V+ PG ++ + G+STR T Sbjct: 31 SRSRPRLRSRSRSLPRPVSPSRSRGRSRSRSRGSEVENPGTTLY---VTGLSTRVT 83 >At3g56590.1 68416.m06293 hydroxyproline-rich glycoprotein family protein Length = 477 Score = 28.7 bits (61), Expect = 3.8 Identities = 21/77 (27%), Positives = 29/77 (37%) Frame = +2 Query: 401 APRPSPSGSTSWTAASYRTCRESPLPSPGTTSRSRARLRAPGGTIRAHGVPVRXHGAGRA 580 AP PS S T A + + SPLP P + R G + H R+ Sbjct: 348 APEPSLSPPTKGFAPASAPTKHSPLP-PRNPPCPYEQRRPKGNSALNHHTAPPTPAPHRS 406 Query: 581 EAHGPAVDPGGRVHRQV 631 + H PA +P H + Sbjct: 407 QPHPPAPNPAPPRHHAI 423 >At1g64350.1 68414.m07292 transducin family protein / WD-40 repeat family protein contains 5 WD-40 repeats (PF00400); similar to nuclear pore protein SEH1 (SP:P53011) [Saccharomyces cerevisiae] Length = 326 Score = 28.7 bits (61), Expect = 3.8 Identities = 11/19 (57%), Positives = 13/19 (68%) Frame = +1 Query: 496 TLEGTTTCSGWHNSGTRCA 552 TL+ TTCS W+ SG R A Sbjct: 7 TLDSGTTCSSWNQSGDRLA 25 >At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30) nearly identical to SC35-like splicing factor SCL30, 30 kD [Arabidopsis thaliana] GI:9843657; Serine/arginine-rich protein/putative splicing factor, Arabidopdis thaliana, EMBL:AF099940; contains Pfam profile PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 262 Score = 28.3 bits (60), Expect = 5.0 Identities = 16/39 (41%), Positives = 18/39 (46%) Frame = +1 Query: 4 GRVGXRACLRGRQVRRDPRDGLQHYRSGXCDPGVRQHGG 120 GR R+ R R RR P D YRS P R+ GG Sbjct: 153 GRSRSRSISRSRSPRR-PSDSRSRYRSRSYSPAPRRRGG 190 >At3g08670.1 68416.m01007 expressed protein Length = 567 Score = 27.9 bits (59), Expect = 6.7 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Frame = +2 Query: 380 KPSTRRWAP-RPSPSGSTSWTAASYRTCRESPLPSPGTTSRSRARLRAPGGTIR 538 +P++R P R SPS STS +A S T S G T S +R +PG +R Sbjct: 264 RPNSRPSTPTRRSPS-STSLSATSGPTISGGRAASNGRTGPSLSRPSSPGPRVR 316 >At4g19390.1 68417.m02854 expressed protein Length = 273 Score = 27.5 bits (58), Expect = 8.8 Identities = 14/34 (41%), Positives = 18/34 (52%) Frame = +1 Query: 541 TRCACXXSWRWTCRSPWARCGSWGTCSSASTTRS 642 T+ W W+ RSP R S T +SAST+ S Sbjct: 51 TKTITSSDWSWSYRSP-GRLASASTSTSASTSTS 83 >At3g08680.2 68416.m01009 leucine-rich repeat transmembrane protein kinase, putative contains Pfam profile: PF00069 Eukaryotic protein kinase domain, PF00560 leucine Rich Repeat (5 copies) Length = 640 Score = 27.5 bits (58), Expect = 8.8 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Frame = -1 Query: 509 VPSSVKSFPA-MVKVTRGRCGMRLQSTTYCPKAMAVAPTAALRASTSLEGPAISDV 345 VPSSVKSFPA + CG L T CP+ AP+ + +T EGP +++ Sbjct: 199 VPSSVKSFPASSFQGNSLLCGAPL---TPCPE-NTTAPSPS--PTTPTEGPGTTNI 248 >At3g08680.1 68416.m01008 leucine-rich repeat transmembrane protein kinase, putative contains Pfam profile: PF00069 Eukaryotic protein kinase domain, PF00560 leucine Rich Repeat (5 copies) Length = 640 Score = 27.5 bits (58), Expect = 8.8 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Frame = -1 Query: 509 VPSSVKSFPA-MVKVTRGRCGMRLQSTTYCPKAMAVAPTAALRASTSLEGPAISDV 345 VPSSVKSFPA + CG L T CP+ AP+ + +T EGP +++ Sbjct: 199 VPSSVKSFPASSFQGNSLLCGAPL---TPCPE-NTTAPSPS--PTTPTEGPGTTNI 248 >At1g06820.1 68414.m00727 carotenoid isomerase, putative similar to carotenoid isomerase from Lycopersicon esculentum [gi:19550437]; contains Pfam profile: PF02032 Phytoene dehydrogenase related enzyme Length = 595 Score = 27.5 bits (58), Expect = 8.8 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%) Frame = +2 Query: 50 GILGMAFSTIAVDXVTPVFDN-MVAQGLVQPVFS 148 G+LGM F+T A+D + V D+ QG++ FS Sbjct: 526 GLLGMPFNTTAIDGLYCVGDSCFPGQGVIAVAFS 559 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,792,413 Number of Sequences: 28952 Number of extensions: 278370 Number of successful extensions: 980 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 912 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 973 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1457719448 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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