Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30205
         (586 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0730 - 31552747-31553088,31553583-31553646,31553743-315538...    85   3e-17
05_07_0131 + 27898028-27898042,27898159-27898274,27898361-278984...    85   4e-17
01_06_0180 - 27260099-27260440,27261236-27261350,27261403-272615...    84   9e-17
12_01_0752 - 6798938-6799312,6799628-6799768,6800257-6800325,680...    32   0.39 
03_01_0219 + 1731267-1731728,1732148-1732235,1732330-1732417,173...    29   3.6  
12_02_0133 - 14057469-14057497,14057516-14057581,14057770-140583...    28   6.3  
02_04_0185 - 20748206-20748405,20749067-20749232,20749373-207494...    28   6.3  
11_06_0007 - 19171122-19172036                                         27   8.3  

>01_06_0730 -
           31552747-31553088,31553583-31553646,31553743-31553858,
           31553964-31553978
          Length = 178

 Score = 85.4 bits (202), Expect = 3e-17
 Identities = 34/83 (40%), Positives = 56/83 (67%)
 Frame = +1

Query: 7   QLREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXX 186
           +  +Y+V+GR LP+  +  P +Y+M++++ + + AKS+FWYFLR+LKK KK+ G+I+   
Sbjct: 5   RFHQYQVVGRGLPTPTDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQILAIN 64

Query: 187 XXXXXXXXXXXNFGIWLRYESRS 255
                      N+GIWLRY+SR+
Sbjct: 65  EIFEKNPTTIKNYGIWLRYQSRT 87



 Score = 82.2 bits (194), Expect = 3e-16
 Identities = 42/89 (47%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
 Frame = +3

Query: 255 GVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHNS 434
           G HNMY+EYRD ++ GAV Q Y +M +RHR R   IQIIK   +    C+R   KQFH S
Sbjct: 88  GYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTATVHFKLCKRDNTKQFHKS 147

Query: 435 TIRFPL---PKRVHHYKRLNTFAYKRPRL 512
            I+FPL     R    K   TF   RP L
Sbjct: 148 DIKFPLVYRKVRPPTRKLKTTFKASRPNL 176


>05_07_0131 +
           27898028-27898042,27898159-27898274,27898361-27898424,
           27899450-27899791
          Length = 178

 Score = 85.0 bits (201), Expect = 4e-17
 Identities = 43/89 (48%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
 Frame = +3

Query: 255 GVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHNS 434
           G HNMY+EYRD ++ GAV Q Y +M +RHR R   IQIIK   +    C+R   KQFHNS
Sbjct: 88  GYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTATVHFKLCKRDNTKQFHNS 147

Query: 435 TIRFPL---PKRVHHYKRLNTFAYKRPRL 512
            I+FPL     R    K   TF   RP L
Sbjct: 148 NIKFPLVYRKVRPPTRKLKTTFKASRPNL 176



 Score = 84.6 bits (200), Expect = 5e-17
 Identities = 33/83 (39%), Positives = 56/83 (67%)
 Frame = +1

Query: 7   QLREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXX 186
           +  +Y+V+GR LP+  +  P +Y+M++++ + + AKS+FWYFLR+LKK KK+ G+++   
Sbjct: 5   RFHQYQVVGRALPTPGDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAIN 64

Query: 187 XXXXXXXXXXXNFGIWLRYESRS 255
                      N+GIWLRY+SR+
Sbjct: 65  EIFERNPTTIKNYGIWLRYQSRT 87


>01_06_0180 -
           27260099-27260440,27261236-27261350,27261403-27261518,
           27261594-27261608
          Length = 195

 Score = 83.8 bits (198), Expect = 9e-17
 Identities = 42/89 (47%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
 Frame = +3

Query: 255 GVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHNS 434
           G HNMY+EYRD ++ GAV Q Y +M +RHR R   IQIIK   +    C+R   KQFHN 
Sbjct: 105 GYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTATVHFKLCKRDNTKQFHNG 164

Query: 435 TIRFPL---PKRVHHYKRLNTFAYKRPRL 512
           +I+FPL     R    K   TF   RP L
Sbjct: 165 SIKFPLVYRKVRPPTRKLKTTFKASRPNL 193



 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 33/100 (33%), Positives = 56/100 (56%), Gaps = 17/100 (17%)
 Frame = +1

Query: 7   QLREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRF----------W-------YFL 135
           +  +Y+V+GR LP+  +  P +Y+M++++ + + AKS+F          W       YFL
Sbjct: 5   RFHQYQVVGRALPTPGDEHPKIYRMKLWATNEVRAKSKFCSSYLVRFADWGACPVCRYFL 64

Query: 136 RQLKKFKKTTGEIVXXXXXXXXXXXXXXNFGIWLRYESRS 255
           R+LKK KK+ G+++              N+GIWLRY+SR+
Sbjct: 65  RKLKKVKKSNGQMLAINEIFERNPTTIKNYGIWLRYQSRT 104


>12_01_0752 -
           6798938-6799312,6799628-6799768,6800257-6800325,
           6800407-6800454,6801740-6801836,6801922-6802001,
           6802099-6802170,6802335-6802429,6802853-6802934,
           6805476-6805853
          Length = 478

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
 Frame = +2

Query: 359 NTDHQSGSNQGCC----VSPSTGQTVPQQHHQIPIAQTCAP 469
           N  H  G N+G        P+  QT P+QH Q+PI  T  P
Sbjct: 406 NNHHHQGGNRGGAHHVGTPPNQQQTKPEQHPQLPIGATKQP 446


>03_01_0219 +
           1731267-1731728,1732148-1732235,1732330-1732417,
           1732528-1732573,1732687-1732785,1734363-1734431,
           1735706-1736036,1736123-1736256,1736400-1737251
          Length = 722

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 344 SPSSLNTDHQSGSNQGCCVSPSTGQTVPQQHH 439
           S + L T  ++G+N  C    STGQT P Q H
Sbjct: 561 SATKLATKCENGANVSCDGVGSTGQTPPLQQH 592


>12_02_0133 - 14057469-14057497,14057516-14057581,14057770-14058363,
            14058450-14058570,14058926-14059320,14059410-14059534,
            14059646-14059876,14060012-14060484,14060587-14060693,
            14060842-14061172,14061222-14061250,14061345-14061901,
            14062170-14062255,14062344-14062406,14062646-14063001,
            14063101-14063356
          Length = 1272

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +2

Query: 341  QSPSSLNTDHQSGSNQGCCVSPSTGQTVPQQHHQIPIAQTCAPLQET 481
            Q P S  T++Q  SN     +    Q   + HHQ+PI  + +    T
Sbjct: 950  QCPQSTETNYQRCSNGETESNQPVSQNELEDHHQVPITASSSTNNST 996


>02_04_0185 -
           20748206-20748405,20749067-20749232,20749373-20749471,
           20749487-20749561,20749663-20749743,20750121-20750274,
           20750330-20750425,20750518-20750727,20750746-20750957
          Length = 430

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 426 HNSTIRFPLPKRVHHYKRLNTFAY 497
           H+  +R PLP  +HH     TFAY
Sbjct: 221 HDPEVRDPLPLTIHHLPIAVTFAY 244


>11_06_0007 - 19171122-19172036
          Length = 304

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 427 WNCLTCGRRHAAALITSTLMICI 359
           W C  CG R AA L+     +C+
Sbjct: 252 WGCKACGEREAAVLLLPCRHLCL 274


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,960,150
Number of Sequences: 37544
Number of extensions: 333312
Number of successful extensions: 1006
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)