Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30205
         (586 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038611-9|AAB92041.2|  180|Caenorhabditis elegans Ribosomal pro...   109   1e-24
Z48717-10|CAA88612.2|  423|Caenorhabditis elegans Hypothetical p...    28   4.2  
Z48584-9|CAA88478.2|  423|Caenorhabditis elegans Hypothetical pr...    28   4.2  
AL021447-2|CAA16273.2|  807|Caenorhabditis elegans Hypothetical ...    28   5.6  
AC024211-6|AAF36067.2| 1454|Caenorhabditis elegans Hypothetical ...    27   7.4  
Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein.      27   9.8  

>AF038611-9|AAB92041.2|  180|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 20 protein.
          Length = 180

 Score =  109 bits (262), Expect = 1e-24
 Identities = 50/83 (60%), Positives = 60/83 (72%)
 Frame = +3

Query: 255 GVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHNS 434
           G HNMYREYRD +V GAVTQCYRDMGARHRA+A  I I+KV+ +KA   +R  +K FH++
Sbjct: 92  GHHNMYREYRDTTVAGAVTQCYRDMGARHRAQADRIHILKVQTVKAEDTKRAGIKMFHDA 151

Query: 435 TIRFPLPKRVHHYKRLNTFAYKR 503
            IRFPLP RV   K L+ F   R
Sbjct: 152 KIRFPLPHRVTKRKNLSVFTTAR 174



 Score = 92.3 bits (219), Expect = 2e-19
 Identities = 37/82 (45%), Positives = 56/82 (68%)
 Frame = +1

Query: 10  LREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXXX 189
           L EY V+GRK+P+E EP  P++KM+IF+ + ++AKSRFWYF+  L++ KK  GEI+    
Sbjct: 10  LNEYVVVGRKIPTEKEPVTPIWKMQIFATNHVIAKSRFWYFVSMLRRVKKANGEILSIKQ 69

Query: 190 XXXXXXXXXXNFGIWLRYESRS 255
                     N+G+WL+Y+SR+
Sbjct: 70  VFEKNPGTVKNYGVWLKYDSRT 91


>Z48717-10|CAA88612.2|  423|Caenorhabditis elegans Hypothetical
           protein ZK1321.4 protein.
          Length = 423

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +2

Query: 341 QSPSSLNTDHQSGSNQGCCVSPSTGQTVPQQHHQIPIAQTCAP 469
           QS +  ++ HQS  N G      +G   P  HH IPI  + AP
Sbjct: 164 QSSTFHSSSHQSSGNYG------SGGFSPSSHHNIPIRHSPAP 200


>Z48584-9|CAA88478.2|  423|Caenorhabditis elegans Hypothetical
           protein ZK1321.4 protein.
          Length = 423

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +2

Query: 341 QSPSSLNTDHQSGSNQGCCVSPSTGQTVPQQHHQIPIAQTCAP 469
           QS +  ++ HQS  N G      +G   P  HH IPI  + AP
Sbjct: 164 QSSTFHSSSHQSSGNYG------SGGFSPSSHHNIPIRHSPAP 200


>AL021447-2|CAA16273.2|  807|Caenorhabditis elegans Hypothetical
           protein F19B2.6 protein.
          Length = 807

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +2

Query: 338 TQSPSSLNTDHQSGSNQGCCVSPSTGQTVPQQHHQIPIAQTCAP 469
           +Q  +S N D+ +G  +GCCV     +  P  +H       C P
Sbjct: 387 SQQGTSQNRDNLAGM-KGCCVKDQYHEPAPSGYHPPQAQSNCYP 429


>AC024211-6|AAF36067.2| 1454|Caenorhabditis elegans Hypothetical
           protein Y76B12C.7 protein.
          Length = 1454

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
 Frame = -2

Query: 291 SGHGIHGTCCVHRTRLIA*PDTKVLNLDGA-FLWNFLNRDNFTSGLLELLKLSQEIPETR 115
           SGHG +G  CVH+  L     T  L L+GA  LW    ++N +   L + ++   +    
Sbjct: 483 SGHGKNGALCVHQRSLRPEIITSSL-LEGAEQLWAVGRKENESHKYLIVSRVRSTL-ILE 540

Query: 114 FGDNWIRRENSHFIQG 67
            G+  +  E   F+ G
Sbjct: 541 LGEELVELEEQLFVTG 556


>Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical
           protein C02B4.1 protein.
          Length = 1461

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = +3

Query: 450 LPKRVHHYKRLNTFAYKRPR--LTSCNCNVR 536
           LPKRVHH ++     YKR    LT+    +R
Sbjct: 148 LPKRVHHLQKERHLVYKRSAGLLTNAESKIR 178


>Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical
           protein C02B4.1 protein.
          Length = 1461

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = +3

Query: 450 LPKRVHHYKRLNTFAYKRPR--LTSCNCNVR 536
           LPKRVHH ++     YKR    LT+    +R
Sbjct: 148 LPKRVHHLQKERHLVYKRSAGLLTNAESKIR 178


>AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein.
          Length = 1461

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = +3

Query: 450 LPKRVHHYKRLNTFAYKRPR--LTSCNCNVR 536
           LPKRVHH ++     YKR    LT+    +R
Sbjct: 148 LPKRVHHLQKERHLVYKRSAGLLTNAESKIR 178


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,412,089
Number of Sequences: 27780
Number of extensions: 278635
Number of successful extensions: 797
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)