Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30205
         (586 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   2.9  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    22   3.9  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   6.7  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -1

Query: 301 PPTLRSRYSRYMLCTPNETHSVARYQSS 218
           P  +R RY     C P++  +  RY S+
Sbjct: 410 PGRVRRRYQPAFRCKPSQRFASGRYYSA 437


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 347 PSSLNTDHQSGSNQGCCVSP 406
           PSSLN   +   N GC + P
Sbjct: 91  PSSLNVISEKIGNGGCLLQP 110


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 527 TITRSKSRPLVREGIKSLVVV 465
           T+T  +SRP  +EG++  V+V
Sbjct: 114 TVTHVESRPSKKEGLQFDVLV 134


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,643
Number of Sequences: 438
Number of extensions: 3349
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)