Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30205
         (586 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g14600.1 68416.m01849 60S ribosomal protein L18A (RPL18aC) si...    89   3e-18
At2g34480.1 68415.m04233 60S ribosomal protein L18A (RPL18aB)          89   3e-18
At1g29965.1 68414.m03664 60S ribosomal protein L18A  (RPL18aA) JRW     89   3e-18
At2g35200.1 68415.m04317 expressed protein                             30   0.99 
At3g57460.1 68416.m06397 expressed protein weak similarity to SP...    29   2.3  
At4g24860.1 68417.m03559 AAA-type ATPase family protein contains...    28   5.3  
At3g43870.1 68416.m04696 hypothetical protein                          27   7.0  
At3g43390.1 68416.m04592 hypothetical protein similar to At3g243...    27   7.0  
At1g24220.1 68414.m03054 paired amphipathic helix repeat-contain...    27   7.0  

>At3g14600.1 68416.m01849 60S ribosomal protein L18A (RPL18aC)
           similar to GB:CAA08791 from [Podocoryne carnea]
          Length = 178

 Score = 88.6 bits (210), Expect = 3e-18
 Identities = 34/83 (40%), Positives = 57/83 (68%)
 Frame = +1

Query: 7   QLREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXX 186
           +  +Y+V+GR LP+EN+  P +Y+M+++  + + AKS+FWYF+R+LKK KK+ G+++   
Sbjct: 5   RFHQYQVVGRALPTENDEHPKIYRMKLWGRNEVCAKSKFWYFMRKLKKVKKSNGQMLAIN 64

Query: 187 XXXXXXXXXXXNFGIWLRYESRS 255
                      N+GIWLRY+SR+
Sbjct: 65  EIFEKNPTTIKNYGIWLRYQSRT 87



 Score = 82.6 bits (195), Expect = 2e-16
 Identities = 36/66 (54%), Positives = 44/66 (66%)
 Frame = +3

Query: 255 GVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHNS 434
           G HNMY+EYRD ++ G V Q Y +M +RHR R   IQIIK   + A  C+R   KQFHNS
Sbjct: 88  GYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRFPCIQIIKTATVPAKLCKREITKQFHNS 147

Query: 435 TIRFPL 452
            I+FPL
Sbjct: 148 KIKFPL 153


>At2g34480.1 68415.m04233 60S ribosomal protein L18A (RPL18aB)
          Length = 178

 Score = 88.6 bits (210), Expect = 3e-18
 Identities = 35/83 (42%), Positives = 58/83 (69%)
 Frame = +1

Query: 7   QLREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXX 186
           +  +Y+V+GR LP+E + +P +Y+M++++ + + AKS+FWYFLR+LKK KK+ G+++   
Sbjct: 5   RFHQYQVVGRALPTEKDVQPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAIN 64

Query: 187 XXXXXXXXXXXNFGIWLRYESRS 255
                      NFGIWLRY+SR+
Sbjct: 65  EIYEKNPTTIKNFGIWLRYQSRT 87



 Score = 85.4 bits (202), Expect = 2e-17
 Identities = 37/66 (56%), Positives = 45/66 (68%)
 Frame = +3

Query: 255 GVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHNS 434
           G HNMY+EYRD ++ GAV Q Y +M +RHR R   IQIIK   + A  C+R   KQFHNS
Sbjct: 88  GYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTATVPAKLCKRESTKQFHNS 147

Query: 435 TIRFPL 452
            I+FPL
Sbjct: 148 KIKFPL 153


>At1g29965.1 68414.m03664 60S ribosomal protein L18A  (RPL18aA) JRW
          Length = 178

 Score = 88.6 bits (210), Expect = 3e-18
 Identities = 34/83 (40%), Positives = 59/83 (71%)
 Frame = +1

Query: 7   QLREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXX 186
           +L +Y+V+GR LP+E + +P +Y+M++++ + ++AKS+FWY+LR+ KK KK+ G+++   
Sbjct: 5   RLHQYQVVGRALPTEKDEQPKIYRMKLWATNEVLAKSKFWYYLRRQKKVKKSNGQMLAIN 64

Query: 187 XXXXXXXXXXXNFGIWLRYESRS 255
                      NFGIWLRY+SR+
Sbjct: 65  EIFEKNPTTIKNFGIWLRYQSRT 87



 Score = 86.6 bits (205), Expect = 1e-17
 Identities = 43/89 (48%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
 Frame = +3

Query: 255 GVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHNS 434
           G HNMY+EYRD ++ GAV Q Y +M +RHR R   IQIIK   + A+ C+R   KQFHNS
Sbjct: 88  GYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTATVPASLCKRESTKQFHNS 147

Query: 435 TIRFPL---PKRVHHYKRLNTFAYKRPRL 512
            I+FPL     R    K   TF   +P L
Sbjct: 148 KIKFPLVFRKVRPPTRKLKTTFKANKPNL 176


>At2g35200.1 68415.m04317 expressed protein
          Length = 201

 Score = 30.3 bits (65), Expect = 0.99
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 85  IFSPDPIVAKSRFWYFLRQLKKFKKT 162
           +FSP P+ +K   WYF   +K F+++
Sbjct: 160 LFSPTPVTSKGNGWYFPSPIKVFRQS 185


>At3g57460.1 68416.m06397 expressed protein weak similarity to
           SP|O43847 Nardilysin precursor (EC 3.4.24.61)
           (N-arginine dibasic convertase) {Homo sapiens}
          Length = 356

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3

Query: 414 VKQFHNSTIRFPLPKRVHHYK 476
           +KQ HN T+ +P+   +HHY+
Sbjct: 44  IKQGHNLTVSWPVTPSIHHYE 64


>At4g24860.1 68417.m03559 AAA-type ATPase family protein contains
           Pfam profile PF00004: ATPase, AAA family
          Length = 1122

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 9/68 (13%)
 Frame = -3

Query: 557 HGFYCYVTYITITRSKSRPLVREGIKSLV-VVHTFGQW--------ESDGAVVELFDLWT 405
           HGF+C  T +    S  + LVR  + +L  VVH+  +         +++ +V   FDL++
Sbjct: 563 HGFFCKATDLPFKSSSFKDLVRLLVNTLFEVVHSESRTCPFILFLKDAEKSVAGNFDLYS 622

Query: 404 ATRSSLDY 381
           A +  L+Y
Sbjct: 623 AFQIRLEY 630


>At3g43870.1 68416.m04696 hypothetical protein 
          Length = 187

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -3

Query: 143 SCLRKYQKRDLATIGSGEKILILYKGGLGSFSEGSLRPITSYSLN 9
           SC ++++  D+ TIG      +  KG +     G +R  T Y LN
Sbjct: 4   SCFKEFRVADILTIGFKLHPYLTLKGLIEMKRRGLIRDTTGYILN 48


>At3g43390.1 68416.m04592 hypothetical protein similar to At3g24380,
           At5g36840, At5g35010, At3g42740, At4g05290, At2g14770,
           At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
           At1g27780, At5g36850, At3g42730, At1g52020, At3g24390,
           At4g05280, At1g25886, At4g03300
          Length = 1113

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
 Frame = +1

Query: 349 ELTQYRSSKWK*SRLLRVAVHRSNSSTTAPSDSHCPNVCTT---TRDLIPSRTRGLD 510
           E+ + +    K  R+LRV+  R  SST A  +   P+V  T   T + +P R   LD
Sbjct: 9   EVPRKQHGPGKEKRVLRVSPRRKRSSTKATEELGSPSVAPTEDLTVEELPPRLFALD 65


>At1g24220.1 68414.m03054 paired amphipathic helix repeat-containing
           protein weak similarity to transcription co-repressor
           Sin3 [Xenopus laevis] GI:4960210; contains Pfam profile
           PF02671: Paired amphipathic helix repeat
          Length = 744

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -3

Query: 155 LNFLSCLR-KYQKRDLATIGSGEKILILYKGGLGSFSE 45
           LNF++ L+ ++Q+ D   +GS   I+ +YK G  S  E
Sbjct: 374 LNFMNKLKTRFQRIDTHVVGSFHSIMTMYKEGKKSRKE 411


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,757,422
Number of Sequences: 28952
Number of extensions: 262788
Number of successful extensions: 744
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1151426952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)