Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30204
(738 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces pomb... 71 2e-13
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 47 3e-06
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub... 29 0.69
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy... 27 2.1
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 2.8
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar... 27 3.7
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha... 27 3.7
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc... 26 6.4
SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 6.4
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 26 6.4
SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces pomb... 26 6.4
SPCC24B10.20 |||short chain dehydrogenase |Schizosaccharomyces p... 25 8.5
SPAC3G9.07c |hos2|hda1, phd1|histone deacetylase |Schizosaccharo... 25 8.5
>SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 298
Score = 70.5 bits (165), Expect = 2e-13
Identities = 34/75 (45%), Positives = 48/75 (64%)
Frame = +1
Query: 256 IIRQVEYYFGDVNLHRDKFLQEQIKLDDGWVPLEILTKFNRLAKLTEDTDVIANALNKST 435
+++QVE+YF D NL DKFL + +DGWVP++ + F R+ + + + I NAL KS
Sbjct: 67 VLKQVEFYFSDTNLPHDKFLWTTSQKNDGWVPIQTIANFKRMRRF-QPLEAIVNALRKSP 125
Query: 436 SGLLEVSEDNKKVRR 480
LLEV E +KVRR
Sbjct: 126 E-LLEVDEAGEKVRR 139
Score = 35.5 bits (78), Expect = 0.008
Identities = 23/69 (33%), Positives = 32/69 (46%)
Frame = +3
Query: 522 KEICNRSIYAKGFAKDASLDDLLNYFKQFQEVENVIMRRYVEKSTKKRLFKGSVFATFQT 701
K + RS+Y KGF D D + K F+E I + + K+ FKGSVF F+
Sbjct: 149 KSVMERSVYCKGFG-DEKDDTQIALEKFFEENAGPISAVRMRRDDDKK-FKGSVFVEFKE 206
Query: 702 REXGRKVYE 728
+ K E
Sbjct: 207 PDVANKFLE 215
>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 475
Score = 46.8 bits (106), Expect = 3e-06
Identities = 24/70 (34%), Positives = 42/70 (60%)
Frame = +1
Query: 253 WIIRQVEYYFGDVNLHRDKFLQEQIKLDDGWVPLEILTKFNRLAKLTEDTDVIANALNKS 432
++ Q+EYYF NL +D FL++ + D+G+VPL L FNR+ + D +++ A
Sbjct: 328 FLTSQLEYYFSIENLCKDMFLRKHMD-DEGYVPLAFLASFNRIKSFSTDLNLLHAAC--K 384
Query: 433 TSGLLEVSED 462
S +++V+ D
Sbjct: 385 ASDIIDVAID 394
>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1129
Score = 29.1 bits (62), Expect = 0.69
Identities = 20/71 (28%), Positives = 33/71 (46%)
Frame = +1
Query: 349 PLEILTKFNRLAKLTEDTDVIANALNKSTSGLLEVSEDNKKVRRNPEQPLPEMTRSFVKK 528
P+ I TK R A + + +A LN+ TSG+ N++ R LP ++ +
Sbjct: 617 PVLITTKIKRNANIWDLQKHLAGLLNRDTSGIRIWLMTNRQ-NRTVRVDLPLDKKTILVD 675
Query: 529 YATDQFMRKDL 561
D +RKD+
Sbjct: 676 QICDMHIRKDM 686
>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 756
Score = 27.5 bits (58), Expect = 2.1
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +3
Query: 585 LLNYFKQFQEVENVI-MRRYVEKSTKKRLFKGSVFATFQTR 704
LLN+FK+++ VE + + R + + K F VF TFQ++
Sbjct: 161 LLNFFKKYRSVERIASLSRSISEFQKS--FYEQVFDTFQSQ 199
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.1 bits (57), Expect = 2.8
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +3
Query: 546 YAKGFAKDASLD-DLLNYFKQFQEVENVIMRRYVEKSTKKRLFKGSVFATFQTREXGRK 719
Y K K+ + D + L+YF++F + V +R Y ++ K F+ ++F + E K
Sbjct: 983 YTKKNPKEPTADVNSLSYFEKFFVLFVVNLRHYFQERMKALKFRSTLFGDLEILEVRMK 1041
>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 26.6 bits (56), Expect = 3.7
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 483 SRTATARNDEELRKEICNRSIYAKGFAKDASL 578
S ++ ND+ KE+ NR + KGFA D S+
Sbjct: 551 SSQSSGANDD---KEVRNRKVVEKGFANDCSV 579
>SPCC364.06 |nap1||nucleosome assembly protein Nap1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 393
Score = 26.6 bits (56), Expect = 3.7
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = +1
Query: 331 LDDGWVPLEILT-KFNRLAKLT-EDTDVIANALNKSTSGLLEVSEDNKKVRRNPEQPLPE 504
+D+G LE + K L LT E + A+ + SGL + + + ++ L E
Sbjct: 43 IDEGDENLEAIDGKLGSLLHLTSEGVSELPEAVQRRISGLRGLQKRYSDLESQFQKELFE 102
Query: 505 MTRSFVKKYA 534
+ +++ KKYA
Sbjct: 103 LEKAYAKKYA 112
>SPAC31A2.14 |||WD repeat protein, human WRDR48
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +1
Query: 244 IGYWIIRQVEYYFGDVNLHRD-KFLQ 318
+G WI++ + F D LHRD KF Q
Sbjct: 511 LGVWILKNLFREFIDAELHRDLKFRQ 536
>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 525
Score = 25.8 bits (54), Expect = 6.4
Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 3/23 (13%)
Frame = -1
Query: 519 EAPRHFWQWLFW---ITSHFFVI 460
E P+ W+WL+W I FF+I
Sbjct: 230 ENPKLTWRWLYWIDVIVGGFFII 252
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 25.8 bits (54), Expect = 6.4
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 161 MTEDKEVTVETNGQEENAKTENSEDE 238
+ ED V + +E N + EN+EDE
Sbjct: 464 LVEDTSVDISATLEEANTQQENAEDE 489
>SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 515
Score = 25.8 bits (54), Expect = 6.4
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -2
Query: 338 SSNFICSCRNLSRC 297
S NF+CSCR S C
Sbjct: 7 SRNFLCSCRGFSVC 20
>SPCC24B10.20 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 254
Score = 25.4 bits (53), Expect = 8.5
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Frame = +1
Query: 397 DTDVIANALNKSTSGLLEVSEDNKKVRRNPEQPLPEMTR--SFVKKYATDQFMRKDLLKM 570
+TD+ NA+ K S E+ E K +PEQ M + +K F D K+
Sbjct: 193 NTDMFVNAMQKLASKYPEMVESIKSNAISPEQSASSMLKIVDNLKTEDNGMFYNLDGTKL 252
Query: 571 P 573
P
Sbjct: 253 P 253
>SPAC3G9.07c |hos2|hda1, phd1|histone deacetylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 25.4 bits (53), Expect = 8.5
Identities = 8/27 (29%), Positives = 18/27 (66%)
Frame = -3
Query: 343 IRHLILFVLAEIYLDVDLHHQNNIRLA 263
I +++ F +Y+D+D+HH + ++ A
Sbjct: 177 ILNMLRFFPRVLYIDIDIHHGDGVQQA 203
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,956,511
Number of Sequences: 5004
Number of extensions: 59837
Number of successful extensions: 204
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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