Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30204
         (738 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10576| Best HMM Match : La (HMM E-Value=6.9e-28)                    57   2e-08
SB_30685| Best HMM Match : RRM_1 (HMM E-Value=2e-07)                   47   1e-05
SB_13046| Best HMM Match : La (HMM E-Value=5e-23)                      47   1e-05
SB_12468| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-30)               33   0.24 
SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)                       33   0.24 
SB_58243| Best HMM Match : DUF584 (HMM E-Value=1.5)                    31   1.3  
SB_33399| Best HMM Match : Ank (HMM E-Value=0)                         30   1.7  
SB_32151| Best HMM Match : MFMR (HMM E-Value=0.92)                     29   3.9  
SB_18513| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_21800| Best HMM Match : XPG_I (HMM E-Value=1.7e-36)                 28   6.9  
SB_39781| Best HMM Match : cNMP_binding (HMM E-Value=2.2e-19)          28   9.1  
SB_1572| Best HMM Match : Drf_FH1 (HMM E-Value=0.27)                   28   9.1  

>SB_10576| Best HMM Match : La (HMM E-Value=6.9e-28)
          Length = 711

 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 23/53 (43%), Positives = 39/53 (73%)
 Frame = +1

Query: 253 WIIRQVEYYFGDVNLHRDKFLQEQIKLDDGWVPLEILTKFNRLAKLTEDTDVI 411
           +I RQ+EYYF + NLH+D FL++Q+  D+G++P+ ++  F R+  LT D ++I
Sbjct: 124 YIKRQIEYYFSEANLHKDFFLRKQMD-DEGYIPIALIASFYRVQALTHDMNLI 175


>SB_30685| Best HMM Match : RRM_1 (HMM E-Value=2e-07)
          Length = 349

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 24/63 (38%), Positives = 40/63 (63%)
 Frame = +3

Query: 513 ELRKEICNRSIYAKGFAKDASLDDLLNYFKQFQEVENVIMRRYVEKSTKKRLFKGSVFAT 692
           E R++   +++Y KGF K+A+LD+L  YF+   ++  ++MR    K+ + + FKGSVF  
Sbjct: 72  EARQKAKAKTVYVKGFPKEATLDELQEYFEGKGKIVFIMMR----KTLESKEFKGSVFIE 127

Query: 693 FQT 701
           F T
Sbjct: 128 FAT 130



 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 18/45 (40%), Positives = 31/45 (68%)
 Frame = +1

Query: 376 RLAKLTEDTDVIANALNKSTSGLLEVSEDNKKVRRNPEQPLPEMT 510
           ++  +++D + +A  + KS+S L+EVSED  KVRR   +P+ E+T
Sbjct: 26  QIESMSDDVNFLAKTMKKSSSDLIEVSEDLTKVRRTKSKPVEELT 70


>SB_13046| Best HMM Match : La (HMM E-Value=5e-23)
          Length = 442

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 19/57 (33%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
 Frame = +1

Query: 265 QVEYYFGDVNLHRDKFLQEQIK-LDDGWVPLEILTKFNRLAKLTEDTDVIANALNKS 432
           Q+++YF D  L +D+FL++QI+   DG+V +  +  FN++ ++T+D  ++  A+  S
Sbjct: 32  QIDFYFSDSALLKDRFLKQQIENHPDGYVAISTIASFNKIKQMTDDIKLVKKAMKLS 88


>SB_12468| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-30)
          Length = 824

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = +2

Query: 122 LKSEGIFH*RKIKMTEDKEVTVETNGQEENAKTENSEDE 238
           L+   + H R IK T    +  E+NG E NA  E+SEDE
Sbjct: 565 LEKSPLMHDRPIKDTGMCNLAEESNGSESNATQEDSEDE 603


>SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)
          Length = 420

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
 Frame = +3

Query: 534 NRSIYAKGFAKDASLDDLLNYFKQFQEVENV-IMRRYV 644
           +RS++  G A     + L +YF+QF EVE+V IMR ++
Sbjct: 79  SRSVFVGGLASGTDEEGLKDYFEQFGEVESVRIMRTFL 116


>SB_58243| Best HMM Match : DUF584 (HMM E-Value=1.5)
          Length = 1308

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 23/76 (30%), Positives = 32/76 (42%)
 Frame = +3

Query: 354 RNSHKIQSPCQTDRGHRCHRKCP*QIYEWIIGGF*R*QKSET*SRTATARNDEELRKEIC 533
           + S + QSP  T RG    +K   Q +  +   F +  K     R A+   +E  R  I 
Sbjct: 308 KGSSRTQSPSLTPRGATLAKKIQIQSFSAVYTSFNKDNKENQPRRRAST--EERTRDRIM 365

Query: 534 NRSIYAKGFAKDASLD 581
            RSI +      ASLD
Sbjct: 366 ERSINSDNTGSGASLD 381


>SB_33399| Best HMM Match : Ank (HMM E-Value=0)
          Length = 1416

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 149 RKIKMTEDKEVTVETNGQEENAKTENSEDE 238
           +K K+T+DK+V  E    EE  K E+  D+
Sbjct: 739 KKKKLTQDKDVETENKNNEEKEKLEDDADQ 768


>SB_32151| Best HMM Match : MFMR (HMM E-Value=0.92)
          Length = 243

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 125 KSEGIFH*RKIKMTEDKEVTVETNGQEENAKTENSEDET 241
           K +  F+   +  +ED   + ETN  EE++    S+DE+
Sbjct: 186 KKKSTFYSESVLFSEDSSDSDETNSDEESSSASESKDES 224


>SB_18513| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4634

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = -2

Query: 527  FFTKLLVISGSGCSGLRLTFLLSSETSNNP--LVDLLRAFAMTSVSSVSLARRLNF 366
            F  +L+ ++G G  G ++T  +  ETS+NP  L   + A  +  V+  ++ R LNF
Sbjct: 3476 FSVQLISVTGGGRLGTKVTAQVQIETSDNPSGLFGFVNATDLQLVNP-NITRTLNF 3530


>SB_21800| Best HMM Match : XPG_I (HMM E-Value=1.7e-36)
          Length = 942

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 22/67 (32%), Positives = 30/67 (44%)
 Frame = +1

Query: 316 QEQIKLDDGWVPLEILTKFNRLAKLTEDTDVIANALNKSTSGLLEVSEDNKKVRRNPEQP 495
           Q   + DD  V  EI  + NR+    + TD+  N  N ST      S+DNK V    E  
Sbjct: 353 QPSCENDDLTVNGEIAKRRNRIEAPLKSTDLRVNVENVSTK--KGESQDNKPVSMEKESD 410

Query: 496 LPEMTRS 516
           L  + +S
Sbjct: 411 LDSIKQS 417


>SB_39781| Best HMM Match : cNMP_binding (HMM E-Value=2.2e-19)
          Length = 1211

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
 Frame = +3

Query: 483 SRTATARNDEELRKEIC---NRSIYAKGFAKDASLDDLLNYFKQFQEVENVIMRRYVEKS 653
           S+ +  R+D +L   IC    RS   K    DA LD + N        +N+IMR+  + +
Sbjct: 760 SKPSEQRDDADLEHIICWFRQRSPLFKLLEDDALLDIIKNVTLTRYRKDNIIMRQGEKGN 819

Query: 654 TKKRLFKGSV 683
               + KGSV
Sbjct: 820 CFYIILKGSV 829


>SB_1572| Best HMM Match : Drf_FH1 (HMM E-Value=0.27)
          Length = 335

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +3

Query: 348 PIRNSHKIQSPCQTDRGHRCHRKCP 422
           P+   H+I   C+  + HR  ++CP
Sbjct: 84  PVTQDHRIPKRCRVTQDHRIPKRCP 108


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,760,779
Number of Sequences: 59808
Number of extensions: 389535
Number of successful extensions: 1736
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1695
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)