Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30204
(738 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003140-8|AAB54169.1| 396|Caenorhabditis elegans Hypothetical ... 122 4e-28
AF039718-5|AAP68905.1| 760|Caenorhabditis elegans Prion-like-(q... 56 2e-08
AF039718-4|AAP68906.2| 696|Caenorhabditis elegans Prion-like-(q... 56 2e-08
U23515-7|AAK93859.3| 868|Caenorhabditis elegans Larp (rna bindi... 55 5e-08
U23515-6|ABC71805.1| 1065|Caenorhabditis elegans Larp (rna bindi... 55 5e-08
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 33 0.16
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 33 0.16
M14334-2|AAA28071.1| 145|Caenorhabditis elegans protein ( C.ele... 29 3.4
AC006774-1|AAF60615.1| 145|Caenorhabditis elegans Heat shock pr... 29 3.4
U00065-2|AAL27237.1| 672|Caenorhabditis elegans Prion-like-(q/n... 29 4.5
Z82259-1|CAB05126.3| 437|Caenorhabditis elegans Hypothetical pr... 28 6.0
AY305849-1|AAR11993.1| 437|Caenorhabditis elegans nuclear recep... 28 6.0
AY204184-1|AAO39188.1| 353|Caenorhabditis elegans nuclear recep... 28 6.0
AF026215-4|AAB71322.1| 843|Caenorhabditis elegans Hypothetical ... 28 6.0
AL033536-3|CAA22142.1| 1564|Caenorhabditis elegans Hypothetical ... 28 7.9
>AF003140-8|AAB54169.1| 396|Caenorhabditis elegans Hypothetical
protein C44E4.4 protein.
Length = 396
Score = 122 bits (293), Expect = 4e-28
Identities = 52/91 (57%), Positives = 73/91 (80%)
Frame = +1
Query: 256 IIRQVEYYFGDVNLHRDKFLQEQIKLDDGWVPLEILTKFNRLAKLTEDTDVIANALNKST 435
II+Q+EYYFG++NL RDKFLQE++K DDGWVP+ + FNRLA +++DT+ IANA+ S
Sbjct: 16 IIKQLEYYFGNINLPRDKFLQEKLKEDDGWVPITTMLNFNRLASISKDTEKIANAVKNSG 75
Query: 436 SGLLEVSEDNKKVRRNPEQPLPEMTRSFVKK 528
SG++ VSEDN+K+RRN E P+PE + + +K
Sbjct: 76 SGIISVSEDNQKIRRNEENPVPENSLEYWQK 106
Score = 64.9 bits (151), Expect = 6e-11
Identities = 34/81 (41%), Positives = 46/81 (56%)
Frame = +3
Query: 465 QKSET*SRTATARNDEELRKEICNRSIYAKGFAKDASLDDLLNYFKQFQEVENVIMRRYV 644
QK N E ++I +R++Y KGF+ D LDD++ + QF E ENV+MRR
Sbjct: 86 QKIRRNEENPVPENSLEYWQKIKHRTVYMKGFSTDTQLDDIIQWANQFGETENVLMRRL- 144
Query: 645 EKSTKKRLFKGSVFATFQTRE 707
R FKGSVF T++TRE
Sbjct: 145 --KPGDRTFKGSVFITYKTRE 163
>AF039718-5|AAP68905.1| 760|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 64,
isoform a protein.
Length = 760
Score = 56.4 bits (130), Expect = 2e-08
Identities = 29/71 (40%), Positives = 46/71 (64%)
Frame = +1
Query: 265 QVEYYFGDVNLHRDKFLQEQIKLDDGWVPLEILTKFNRLAKLTEDTDVIANALNKSTSGL 444
Q+EYYF NL D++L+ Q+ D +VP+ +L F ++ +LT D D+I AL +ST+
Sbjct: 145 QLEYYFSRENLSSDRYLKCQMD-SDNYVPINVLAGFPKIMRLTTDVDLIVEALKESTN-- 201
Query: 445 LEVSEDNKKVR 477
+E+ E +KVR
Sbjct: 202 VELDEKFEKVR 212
>AF039718-4|AAP68906.2| 696|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 64,
isoform b protein.
Length = 696
Score = 56.4 bits (130), Expect = 2e-08
Identities = 29/71 (40%), Positives = 46/71 (64%)
Frame = +1
Query: 265 QVEYYFGDVNLHRDKFLQEQIKLDDGWVPLEILTKFNRLAKLTEDTDVIANALNKSTSGL 444
Q+EYYF NL D++L+ Q+ D +VP+ +L F ++ +LT D D+I AL +ST+
Sbjct: 47 QLEYYFSRENLSSDRYLKCQMD-SDNYVPINVLAGFPKIMRLTTDVDLIVEALKESTN-- 103
Query: 445 LEVSEDNKKVR 477
+E+ E +KVR
Sbjct: 104 VELDEKFEKVR 114
>U23515-7|AAK93859.3| 868|Caenorhabditis elegans Larp (rna binding
la related protein)homolog protein 1, isoform a protein.
Length = 868
Score = 55.2 bits (127), Expect = 5e-08
Identities = 26/75 (34%), Positives = 48/75 (64%)
Frame = +1
Query: 253 WIIRQVEYYFGDVNLHRDKFLQEQIKLDDGWVPLEILTKFNRLAKLTEDTDVIANALNKS 432
++ +Q+EYYF + NL +D FL+ ++ +G++P+ ++ F R+ LTED +I AL S
Sbjct: 326 YVRKQIEYYFSEENLQKDFFLRRKMG-PEGYLPVALIASFPRVRSLTEDYSLILEALKDS 384
Query: 433 TSGLLEVSEDNKKVR 477
T +++S D ++R
Sbjct: 385 TK--VDMSPDGLQIR 397
>U23515-6|ABC71805.1| 1065|Caenorhabditis elegans Larp (rna binding
la related protein)homolog protein 1, isoform b protein.
Length = 1065
Score = 55.2 bits (127), Expect = 5e-08
Identities = 26/75 (34%), Positives = 48/75 (64%)
Frame = +1
Query: 253 WIIRQVEYYFGDVNLHRDKFLQEQIKLDDGWVPLEILTKFNRLAKLTEDTDVIANALNKS 432
++ +Q+EYYF + NL +D FL+ ++ +G++P+ ++ F R+ LTED +I AL S
Sbjct: 523 YVRKQIEYYFSEENLQKDFFLRRKMG-PEGYLPVALIASFPRVRSLTEDYSLILEALKDS 581
Query: 433 TSGLLEVSEDNKKVR 477
T +++S D ++R
Sbjct: 582 TK--VDMSPDGLQIR 594
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 33.5 bits (73), Expect = 0.16
Identities = 17/64 (26%), Positives = 37/64 (57%)
Frame = +3
Query: 537 RSIYAKGFAKDASLDDLLNYFKQFQEVENVIMRRYVEKSTKKRLFKGSVFATFQTREXGR 716
+ ++ G + ++L+D+ YF+ + +VE+ ++ +K+T++ +G F TF + E
Sbjct: 134 KKVFIGGLSATSTLEDMKQYFETYGKVEDAML--MFDKATQRH--RGFGFVTFDSDEVAD 189
Query: 717 KVYE 728
KV E
Sbjct: 190 KVCE 193
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 33.5 bits (73), Expect = 0.16
Identities = 17/64 (26%), Positives = 37/64 (57%)
Frame = +3
Query: 537 RSIYAKGFAKDASLDDLLNYFKQFQEVENVIMRRYVEKSTKKRLFKGSVFATFQTREXGR 716
+ ++ G + ++L+D+ YF+ + +VE+ ++ +K+T++ +G F TF + E
Sbjct: 134 KKVFIGGLSATSTLEDMKQYFETYGKVEDAML--MFDKATQRH--RGFGFVTFDSDEVAD 189
Query: 717 KVYE 728
KV E
Sbjct: 190 KVCE 193
>M14334-2|AAA28071.1| 145|Caenorhabditis elegans protein (
C.elegans heat shockprotein genes 16-41 and 16-2,
complete cds, flanked byCeRep16 repetitive elements. ).
Length = 145
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/63 (28%), Positives = 30/63 (47%)
Frame = +1
Query: 316 QEQIKLDDGWVPLEILTKFNRLAKLTEDTDVIANALNKSTSGLLEVSEDNKKVRRNPEQP 495
++++K D G+ F+R+ L ED DV A A N S G L + K+ + P
Sbjct: 78 EQELKTDHGYSK----KSFSRVILLPEDVDVGAVASNLSEDGKLSIEAPKKEAVQGRSIP 133
Query: 496 LPE 504
+ +
Sbjct: 134 IQQ 136
>AC006774-1|AAF60615.1| 145|Caenorhabditis elegans Heat shock
protein protein 16.2 protein.
Length = 145
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/63 (28%), Positives = 30/63 (47%)
Frame = +1
Query: 316 QEQIKLDDGWVPLEILTKFNRLAKLTEDTDVIANALNKSTSGLLEVSEDNKKVRRNPEQP 495
++++K D G+ F+R+ L ED DV A A N S G L + K+ + P
Sbjct: 78 EQELKTDHGYSK----KSFSRVILLPEDVDVGAVASNLSEDGKLSIEAPKKEAVQGRSIP 133
Query: 496 LPE 504
+ +
Sbjct: 134 IQQ 136
>U00065-2|AAL27237.1| 672|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 25
protein.
Length = 672
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = -2
Query: 416 FAMTSVSSVSLARRLNFVRISNGTHPSSNFICSCRNLSRCRFTSP-K*YSTCR 261
F TS SS +L V++ + P + + +C N S C+++S + Y CR
Sbjct: 613 FCTTSSSSSNLCSAGQTVQLDSSNQPINCLVSTCPNNSFCQYSSSGQRYVCCR 665
>Z82259-1|CAB05126.3| 437|Caenorhabditis elegans Hypothetical
protein C28D4.1 protein.
Length = 437
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = +2
Query: 149 RKIKMTEDKEVTVETNGQEENAKTENSEDETELDI 253
RKIK D +V +E +EE A +E+++DE LDI
Sbjct: 100 RKIKTEIDGDVKLEI--KEEPADSEDADDECPLDI 132
>AY305849-1|AAR11993.1| 437|Caenorhabditis elegans nuclear receptor
NHR-100 protein.
Length = 437
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = +2
Query: 149 RKIKMTEDKEVTVETNGQEENAKTENSEDETELDI 253
RKIK D +V +E +EE A +E+++DE LDI
Sbjct: 100 RKIKTEIDGDVKLEI--KEEPADSEDADDECPLDI 132
>AY204184-1|AAO39188.1| 353|Caenorhabditis elegans nuclear receptor
NHR-100 protein.
Length = 353
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = +2
Query: 149 RKIKMTEDKEVTVETNGQEENAKTENSEDETELDI 253
RKIK D +V +E +EE A +E+++DE LDI
Sbjct: 16 RKIKTEIDGDVKLEI--KEEPADSEDADDECPLDI 48
>AF026215-4|AAB71322.1| 843|Caenorhabditis elegans Hypothetical
protein F09G2.4 protein.
Length = 843
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +2
Query: 161 MTEDKEVTVETNGQEENAKTENSEDETELDIGLFGKSNIILV 286
M +DK + N QEEN TE + ++IG G + +
Sbjct: 688 MIDDKNREEDVNDQEENGATEGEGNAEPMEIGENGSQESLAI 729
>AL033536-3|CAA22142.1| 1564|Caenorhabditis elegans Hypothetical
protein Y53C10A.9 protein.
Length = 1564
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -3
Query: 205 LLSIGFNSYLFVLGHFDFSLMENTF*FQKTSLLRLRS*D 89
L +IG ++F L HF F +++NTF S L + S D
Sbjct: 229 LTTIGLPLWMFYLEHFLFGVIKNTFLITLLSTLYIFSMD 267
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,007,397
Number of Sequences: 27780
Number of extensions: 321796
Number of successful extensions: 1285
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1281
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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