Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30204
(738 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g46250.2 68418.m05694 RNA recognition motif (RRM)-containing ... 71 8e-13
At5g46250.1 68418.m05693 RNA recognition motif (RRM)-containing ... 71 8e-13
At5g66100.1 68418.m08327 La domain-containing protein similar to... 61 9e-10
At5g21160.1 68418.m02528 La domain-containing protein / proline-... 58 8e-09
At2g43970.2 68415.m05468 La domain-containing protein contains P... 54 7e-08
At2g43970.1 68415.m05467 La domain-containing protein contains P... 54 7e-08
At3g19090.1 68416.m02426 RNA-binding protein, putative similar t... 51 9e-07
At4g32720.1 68417.m04657 RNA recognition motif (RRM)-containing ... 48 6e-06
At4g35890.1 68417.m05097 La domain-containing protein contains P... 47 1e-05
At1g79880.1 68414.m09333 La domain-containing protein contains P... 44 1e-04
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 36 0.028
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 33 0.20
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 31 0.60
At3g61570.1 68416.m06896 intracellular protein transport protein... 31 0.80
At5g40870.1 68418.m04963 uracil phosphoribosyltransferase, putat... 30 1.8
At5g27650.1 68418.m03313 PWWP domain-containing protein hypothet... 30 1.8
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 29 2.4
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 29 2.4
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 29 2.4
At1g53650.1 68414.m06105 RNA-binding protein, putative similar t... 29 3.2
At2g20890.1 68415.m02462 expressed protein 29 4.3
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 28 5.6
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 28 5.6
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 28 5.6
At3g14450.1 68416.m01831 RNA-binding protein, putative contains ... 28 7.4
At1g76740.1 68414.m08931 expressed protein weak similarity to fi... 28 7.4
At5g49580.1 68418.m06136 DNAJ heat shock N-terminal domain-conta... 27 9.8
At5g40320.1 68418.m04892 DC1 domain-containing protein contains ... 27 9.8
At4g07690.1 68417.m01209 hypothetical protein includes At2g24900... 27 9.8
At2g41540.2 68415.m05134 NAD-dependent glycerol-3-phosphate dehy... 27 9.8
At2g41540.1 68415.m05133 NAD-dependent glycerol-3-phosphate dehy... 27 9.8
At2g32970.1 68415.m04041 expressed protein 27 9.8
At2g27170.1 68415.m06029 structural maintenance of chromosomes (... 27 9.8
At1g62010.1 68414.m06994 mitochondrial transcription termination... 27 9.8
At1g53440.1 68414.m06057 leucine-rich repeat family protein / pr... 27 9.8
>At5g46250.2 68418.m05694 RNA recognition motif (RRM)-containing
protein contains similarity to RNA-binding protein;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 420
Score = 70.9 bits (166), Expect = 8e-13
Identities = 41/85 (48%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 IIRQVEYYFGDVNLHRDKFLQEQIKLD-DGWVPLEILTKFNRLAKLTEDTDVIANALNKS 432
IIRQVEYYF D NL DKFL +K + G+VP+ + F+++ KLT D +I +AL +S
Sbjct: 107 IIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHALIVSALKES 166
Query: 433 TSGLLEVSEDNKKVRRNPEQPLPEM 507
+ L VS D KKV+R PLPE+
Sbjct: 167 S--FLVVSADEKKVKR--LSPLPEI 187
>At5g46250.1 68418.m05693 RNA recognition motif (RRM)-containing
protein contains similarity to RNA-binding protein;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 422
Score = 70.9 bits (166), Expect = 8e-13
Identities = 41/85 (48%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 IIRQVEYYFGDVNLHRDKFLQEQIKLD-DGWVPLEILTKFNRLAKLTEDTDVIANALNKS 432
IIRQVEYYF D NL DKFL +K + G+VP+ + F+++ KLT D +I +AL +S
Sbjct: 107 IIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHALIVSALKES 166
Query: 433 TSGLLEVSEDNKKVRRNPEQPLPEM 507
+ L VS D KKV+R PLPE+
Sbjct: 167 S--FLVVSADEKKVKR--LSPLPEI 187
>At5g66100.1 68418.m08327 La domain-containing protein similar to
SP|P40796 La protein homolog (La ribonucleoprotein) (La
autoantigen homolog) {Drosophila melanogaster}; contains
Pfam profile PF05383: La domain
Length = 453
Score = 60.9 bits (141), Expect = 9e-10
Identities = 28/59 (47%), Positives = 39/59 (66%)
Frame = +1
Query: 256 IIRQVEYYFGDVNLHRDKFLQEQIKLDDGWVPLEILTKFNRLAKLTEDTDVIANALNKS 432
I+ QVEYYF NL RD+ L++Q+ D+GWVP+ ++ F RLA+LT + I AL S
Sbjct: 339 ILTQVEYYFSADNLSRDEHLRDQMN-DEGWVPVRVIAAFRRLAELTNNIQTILEALRSS 396
>At5g21160.1 68418.m02528 La domain-containing protein /
proline-rich family protein contains proline-rich
extensin domains, INTERPRO:IPR002965, PF05383: La domain
Length = 826
Score = 57.6 bits (133), Expect = 8e-09
Identities = 32/87 (36%), Positives = 47/87 (54%)
Frame = +1
Query: 256 IIRQVEYYFGDVNLHRDKFLQEQIKLDDGWVPLEILTKFNRLAKLTEDTDVIANALNKST 435
+++QVEYYF D NL D +L + ++GWVP +I+ F R+ +T D D I AL S
Sbjct: 282 VLKQVEYYFSDENLENDHYLISLMD-EEGWVPTKIIAGFKRVKAMTMDVDFIVYALGFSN 340
Query: 436 SGLLEVSEDNKKVRRNPEQPLPEMTRS 516
S +EV D + R +P +S
Sbjct: 341 S--VEVQGDQIRKRDKWSDWIPASKKS 365
>At2g43970.2 68415.m05468 La domain-containing protein contains Pfam
profile PF05383: La domain
Length = 529
Score = 54.4 bits (125), Expect = 7e-08
Identities = 37/110 (33%), Positives = 59/110 (53%), Gaps = 5/110 (4%)
Frame = +1
Query: 256 IIRQVEYYFGDVNLHRDKFLQEQIKLD-DGWVPLEILTKFNRLAKLTEDTDVIANALNKS 432
I+ QVEYYF D+NL L I D +G+VP+ ++ F ++ + + +A L S
Sbjct: 197 IVNQVEYYFSDLNLATTDHLMRFICKDPEGYVPIHVVASFKKIKAVINNNSQLAAVLQNS 256
Query: 433 TSGLLEVSEDNKKVRR-NP--EQPLPEM-TRSFVKKYATDQFMRKDLLKM 570
L VSED KKVRR +P E + E+ +R V + + ++L+K+
Sbjct: 257 AK--LFVSEDGKKVRRISPITESAIEELQSRIIVAENLPEDHCYQNLMKI 304
>At2g43970.1 68415.m05467 La domain-containing protein contains Pfam
profile PF05383: La domain
Length = 545
Score = 54.4 bits (125), Expect = 7e-08
Identities = 37/110 (33%), Positives = 59/110 (53%), Gaps = 5/110 (4%)
Frame = +1
Query: 256 IIRQVEYYFGDVNLHRDKFLQEQIKLD-DGWVPLEILTKFNRLAKLTEDTDVIANALNKS 432
I+ QVEYYF D+NL L I D +G+VP+ ++ F ++ + + +A L S
Sbjct: 197 IVNQVEYYFSDLNLATTDHLMRFICKDPEGYVPIHVVASFKKIKAVINNNSQLAAVLQNS 256
Query: 433 TSGLLEVSEDNKKVRR-NP--EQPLPEM-TRSFVKKYATDQFMRKDLLKM 570
L VSED KKVRR +P E + E+ +R V + + ++L+K+
Sbjct: 257 AK--LFVSEDGKKVRRISPITESAIEELQSRIIVAENLPEDHCYQNLMKI 304
>At3g19090.1 68416.m02426 RNA-binding protein, putative similar to
RNA-binding protein homolog GB:AAF00075 GI:6449448 from
[Brassica napus]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 455
Score = 50.8 bits (116), Expect = 9e-07
Identities = 27/79 (34%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Frame = +1
Query: 256 IIRQVEYYFGDVNLHRDKFLQEQIKLD-DGWVPLEILTKFNRLAKLTEDTDVIANALNKS 432
I++QVEY F D++L ++ + + I D +G+VP+ + ++ LT + +++ AL S
Sbjct: 148 IVKQVEYQFTDMSLLANESISKHISKDPEGYVPVSYIASTKKIKALTSNHHLVSLALRSS 207
Query: 433 TSGLLEVSEDNKKVRRNPE 489
+ L VSED KKV+R +
Sbjct: 208 SK--LVVSEDGKKVKRTSQ 224
>At4g32720.1 68417.m04657 RNA recognition motif (RRM)-containing
protein RNA-binding protein LAH1, Saccharomyces
cerevisiae, PIR2:B48600; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 433
Score = 48.0 bits (109), Expect = 6e-06
Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 12/90 (13%)
Frame = +1
Query: 256 IIRQVEYYFGDVNLHRDKFLQEQI-KLDDGWVPLEILTKFNRLA-----------KLTED 399
++RQVE+YF D NL D FL++ + + +DG V L ++ F+++ + ED
Sbjct: 14 VLRQVEFYFSDSNLPIDDFLKKTVTESEDGLVSLALICSFSKMRGYLKLGDSKGDDIPED 73
Query: 400 TDVIANALNKSTSGLLEVSEDNKKVRRNPE 489
T + A A TS L++S+D KKV R+ E
Sbjct: 74 T-IKAVADTLRTSSALKISDDGKKVGRSTE 102
>At4g35890.1 68417.m05097 La domain-containing protein contains Pfam
PF05383: La domain
Length = 523
Score = 46.8 bits (106), Expect = 1e-05
Identities = 26/74 (35%), Positives = 44/74 (59%)
Frame = +1
Query: 262 RQVEYYFGDVNLHRDKFLQEQIKLDDGWVPLEILTKFNRLAKLTEDTDVIANALNKSTSG 441
+Q++YYF D NL D +L+ + ++G+VPL ++ F ++A+LT++ I AL S
Sbjct: 375 KQIQYYFSDENLITDIYLRGFMN-NEGFVPLRVVAGFKKVAELTDNIQQIVEALQNSPH- 432
Query: 442 LLEVSEDNKKVRRN 483
+EV D + R N
Sbjct: 433 -VEVQGDFIRKRDN 445
>At1g79880.1 68414.m09333 La domain-containing protein contains Pfam
profile PF05383: La domain; similar to putative protein
GB:CAA18589 [Arabidopsis thaliana]
Length = 399
Score = 43.6 bits (98), Expect = 1e-04
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 13/96 (13%)
Frame = +1
Query: 256 IIRQVEYYFGDVNLHRDKFLQEQI-KLDDGWVPLEILTKFNRLAKL-------TED---- 399
++ QVE+YF D NL D FL ++ K DG V L ++ F+R+ L ED
Sbjct: 13 LLTQVEFYFSDSNLPTDGFLNREVTKSKDGLVSLPLVCSFSRMRNLLGLGNINREDIPPR 72
Query: 400 -TDVIANALNKSTSGLLEVSEDNKKVRRNPEQPLPE 504
+ +AN L TS L+VS + +++ R + PE
Sbjct: 73 IVEEVANLLR--TSDFLKVSNNGQRIGRGTKLSKPE 106
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 35.9 bits (79), Expect = 0.028
Identities = 20/70 (28%), Positives = 38/70 (54%)
Frame = +3
Query: 510 EELRKEICNRSIYAKGFAKDASLDDLLNYFKQFQEVENVIMRRYVEKSTKKRLFKGSVFA 689
E ++I R+I+ +GF D + ++L F+ + E+E + ++K T + KG F
Sbjct: 399 ESADRDIAQRNIFVRGFGWDTTQENLKTAFESYGEIEECSV--VMDKDTGRG--KGYGFV 454
Query: 690 TFQTREXGRK 719
F+TR+ R+
Sbjct: 455 MFKTRKGARE 464
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 33.1 bits (72), Expect = 0.20
Identities = 19/65 (29%), Positives = 35/65 (53%)
Frame = +3
Query: 522 KEICNRSIYAKGFAKDASLDDLLNYFKQFQEVENVIMRRYVEKSTKKRLFKGSVFATFQT 701
+++ +R I+ G D D L++ FKQ+ E+E+ + V+K + + KG F F++
Sbjct: 123 EDLVHRKIFVHGLGWDTKADSLIDAFKQYGEIED--CKCVVDKVSGQS--KGYGFILFKS 178
Query: 702 REXGR 716
R R
Sbjct: 179 RSGAR 183
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 31.5 bits (68), Expect = 0.60
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +3
Query: 543 IYAKGFAKDASLDDLLNYFKQFQEVENVIMRRYVEKSTKKRLFKGSVFATF 695
I+ ++AS+DDL +YF +F +++ Y+ K K+ +G F TF
Sbjct: 242 IFVGRLPQEASVDDLRDYFGRFGHIQDA----YIPKDPKRSGHRGFGFVTF 288
>At3g61570.1 68416.m06896 intracellular protein transport protein
USO1-related contains weak similarity to intracellular
protein transport protein USO1 (Swiss-Prot:P25386)
[Saccharomyces cerevisiae]
Length = 712
Score = 31.1 bits (67), Expect = 0.80
Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
Frame = +1
Query: 250 YWIIRQVEYYFGDVNLHRDKFLQEQIKLDDGWVPLEILTKFNR--LAKLTEDTDVIANAL 423
Y I E++ ++ + +D+ ++ +L D LE K +KL V A
Sbjct: 472 YAEIEAKEHFERELAMAKDELMKLSARLKDSDERLESSNKEKEDVTSKLLHAEKVAAEWK 531
Query: 424 NKSTSGLLEVSEDNKKVRRNPEQPLPEMTR-SFVKKYATDQ 543
N+ T +V EDN KVRR EQ + + R S Y D+
Sbjct: 532 NRVT----KVEEDNAKVRRVLEQSMTRLNRMSMESDYLVDR 568
>At5g40870.1 68418.m04963 uracil phosphoribosyltransferase, putative
/ UMP pyrophosphorylase, putative / UPRTase, putative
similar to SP|O65583 Uracil phosphoribosyltransferase
(EC 2.4.2.9) (UMP pyrophosphorylase) (UPRTase)
{Arabidopsis thaliana}; contains Pfam profile PF00485:
Phosphoribulokinase / Uridine kinase family
Length = 486
Score = 29.9 bits (64), Expect = 1.8
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Frame = -2
Query: 503 SGSGCSGLRLTFLLSSETSNNPLVDLLRAFAMTSVSSVS---LARRLNFVRISNGTHPSS 333
SG SGLR LLSS N+ +V LR+ +S S S ++ + +S GT
Sbjct: 16 SGPHFSGLRFDGLLSSSPPNSSVVSSLRSAVSSSSPSSSDPEAPKQPFIIGVSGGTASGK 75
Query: 332 NFIC 321
+C
Sbjct: 76 TTVC 79
>At5g27650.1 68418.m03313 PWWP domain-containing protein
hypothetical protein F22F7.12 - Arabidopsis thaliana,
EMBL:AC009606
Length = 1072
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +2
Query: 122 LKSEGIFH*RKIKMTEDKEVTVETNGQEENAKTENSE-DETELDIGL 259
+KSE + + + +E KE E +G ++ + SE DE ELD+GL
Sbjct: 87 IKSEDVLIDKDDESSEVKEEEEEEDGSDDQSSELGSEADEKELDLGL 133
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/64 (29%), Positives = 31/64 (48%)
Frame = +3
Query: 543 IYAKGFAKDASLDDLLNYFKQFQEVENVIMRRYVEKSTKKRLFKGSVFATFQTREXGRKV 722
I+ G A + D + YF+QF E+ ++ +K+T + KG F TF+ E +
Sbjct: 24 IFVGGLAWETQRDTMRRYFEQFGEIVEAVV--ITDKNTGRS--KGYGFVTFKEAEAAMRA 79
Query: 723 YECQ 734
CQ
Sbjct: 80 --CQ 81
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = +3
Query: 543 IYAKGFAKDASLDDLLNYFKQFQEVENVIMRRYVEKSTKKRLFKGSVFATFQ 698
++ G A + D++ YF+QF E+ ++ +K+T K KG F TF+
Sbjct: 19 VFVGGLAWETPTDEMRRYFEQFGEILEAVI--ITDKNTGKS--KGYGFVTFR 66
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = +3
Query: 543 IYAKGFAKDASLDDLLNYFKQFQEVENVIMRRYVEKSTKKRLFKGSVFATFQ 698
++ G A + D++ YF+QF E+ ++ +K+T K KG F TF+
Sbjct: 19 VFVGGLAWETPTDEMRRYFEQFGEILEAVI--ITDKNTGKS--KGYGFVTFR 66
>At1g53650.1 68414.m06105 RNA-binding protein, putative similar to
RNA-binding protein GB:AAA86641 GI:1174153 from
[Arabidopsis thaliana]
Length = 314
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/38 (34%), Positives = 25/38 (65%)
Frame = +3
Query: 489 TATARNDEELRKEICNRSIYAKGFAKDASLDDLLNYFK 602
T R+++E +E+C+R+IY K+A+ DD+ +F+
Sbjct: 211 TFLPRSEDE--REMCSRTIYCTNVDKNATEDDVNTFFQ 246
>At2g20890.1 68415.m02462 expressed protein
Length = 300
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/69 (21%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +1
Query: 352 LEILTKFNRLAKLTEDTDV-IANALNKSTSGLLEVSEDNKKVRRNPEQPLPEMTRSFVKK 528
+ I TKF+RL+ + T + + ++ T+ + VSE K + ++P+P + + +++
Sbjct: 33 IRICTKFSRLSLNSRSTSKSLIHCMSNVTADVPPVSETKSKFLKAYKRPIPSIYNTVLQE 92
Query: 529 YATDQFMRK 555
Q + +
Sbjct: 93 LIVQQHLMR 101
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = +3
Query: 534 NRSIYAKGFAKDASLDDLLNYFKQFQEVENVIMRRYVEKSTKKRLFKGSVFATFQTREXG 713
+R I+ G D + L+ FKQ+ E+E+ + +K + K KG F +++R
Sbjct: 139 HRKIFVHGLGWDTKTETLIEAFKQYGEIED--CKAVFDKISGKS--KGYGFILYKSRSGA 194
Query: 714 R 716
R
Sbjct: 195 R 195
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = +3
Query: 534 NRSIYAKGFAKDASLDDLLNYFKQFQEVENVIMRRYVEKSTKKRLFKGSVFATFQTREXG 713
+R I+ G D + L+ FKQ+ E+E+ + +K + K KG F +++R
Sbjct: 139 HRKIFVHGLGWDTKTETLIEAFKQYGEIED--CKAVFDKISGKS--KGYGFILYKSRSGA 194
Query: 714 R 716
R
Sbjct: 195 R 195
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = +3
Query: 534 NRSIYAKGFAKDASLDDLLNYFKQFQEVENVIMRRYVEKSTKKRLFKGSVFATFQTREXG 713
+R I+ G D + L+ FKQ+ E+E+ + +K + K KG F +++R
Sbjct: 139 HRKIFVHGLGWDTKTETLIEAFKQYGEIED--CKAVFDKISGKS--KGYGFILYKSRSGA 194
Query: 714 R 716
R
Sbjct: 195 R 195
>At3g14450.1 68416.m01831 RNA-binding protein, putative contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) (2 copies)
Length = 327
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +3
Query: 489 TATARNDEELRKEICNRSIYAKGFAKDASLDDLLNYFK 602
T R+++E +E+C R+IY K S D+ N+F+
Sbjct: 224 TFLPRSEDE--REMCTRTIYCTNIDKKVSQADVRNFFE 259
>At1g76740.1 68414.m08931 expressed protein weak similarity to
fimbriae-associated protein Fap1 (GI:3929312)
[Streptococcus parasanguinis]; weak similarity to 1MDa_1
protein (GI:24620455) [Caenorhabditis elegans]
Length = 1532
Score = 27.9 bits (59), Expect = 7.4
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +1
Query: 352 LEILTKF-NRLAKLTEDTDVIANALNKSTSGLLEVSEDNKKVRRNPEQPLPEMTRS 516
+E+ T+ + L K TE T +L++ + +LE KKVR +PE + E TRS
Sbjct: 27 IEMATRLASVLQKETEGTLTDTISLSEDSVDVLEDDVAVKKVRFSPENEVFEFTRS 82
>At5g49580.1 68418.m06136 DNAJ heat shock N-terminal
domain-containing protein contains similarity to S-locus
protein 5 GI:6069485 from [Brassica rapa]; contains Pfam
profile PF00226 DnaJ domain
Length = 695
Score = 27.5 bits (58), Expect = 9.8
Identities = 22/84 (26%), Positives = 37/84 (44%)
Frame = +3
Query: 486 RTATARNDEELRKEICNRSIYAKGFAKDASLDDLLNYFKQFQEVENVIMRRYVEKSTKKR 665
R A A + E+ S+ K + + ++LLNYF++FQ +K T+
Sbjct: 447 RAAEAFKKLQNAYEVLLDSVKQKSYDDELKREELLNYFRRFQNSS--------QKDTRGH 498
Query: 666 LFKGSVFATFQTREXGRKVYECQR 737
F GS F + + E EC++
Sbjct: 499 GFSGSGFGSSE-GEGEEAFRECRQ 521
>At5g40320.1 68418.m04892 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 594
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 495 TARNDEELRKEICNRSIYAKGFAKDASLDDLL 590
T R+DE +R C R +YA F DD +
Sbjct: 314 TNRHDENIRCRACVRPVYANTFYSCMQCDDFI 345
>At4g07690.1 68417.m01209 hypothetical protein includes At2g24900,
At5g35040, At3g30500, At4g07690
Length = 248
Score = 27.5 bits (58), Expect = 9.8
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = -2
Query: 656 CGFLNVSSHNYILNFLKLLEV 594
CGF+ ++H Y++ F+ +EV
Sbjct: 82 CGFVRSTTHKYMIEFMNAIEV 102
>At2g41540.2 68415.m05134 NAD-dependent glycerol-3-phosphate
dehydrogenase family protein weak similarity to
SP|P46919 Glycerol-3-phosphate dehydrogenase [NAD(P)+]
(EC 1.1.1.94) {Bacillus subtilis}; contains Pfam profile
PF01210: NAD-dependent glycerol-3-phosphate
dehydrogenase
Length = 462
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = +1
Query: 259 IRQVEYYFGDVNLHRDKFLQEQIKLDDGWVPLEILTKFNRLAKLTEDTDVIANAL 423
++ VE GD L+ D+ L++ L+ PL L L + D D++ N L
Sbjct: 112 LKYVEARLGDRTLYADEILKDGFCLNMVDTPLCPLKVVTNLQEAVWDADIVVNGL 166
>At2g41540.1 68415.m05133 NAD-dependent glycerol-3-phosphate
dehydrogenase family protein weak similarity to
SP|P46919 Glycerol-3-phosphate dehydrogenase [NAD(P)+]
(EC 1.1.1.94) {Bacillus subtilis}; contains Pfam profile
PF01210: NAD-dependent glycerol-3-phosphate
dehydrogenase
Length = 462
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = +1
Query: 259 IRQVEYYFGDVNLHRDKFLQEQIKLDDGWVPLEILTKFNRLAKLTEDTDVIANAL 423
++ VE GD L+ D+ L++ L+ PL L L + D D++ N L
Sbjct: 112 LKYVEARLGDRTLYADEILKDGFCLNMVDTPLCPLKVVTNLQEAVWDADIVVNGL 166
>At2g32970.1 68415.m04041 expressed protein
Length = 577
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = -3
Query: 715 LPCSLVWNVANTEPLNKRFFVDFSTYLLIITFSTS*NCL 599
LP SLVWNV NT L + + Y I + NCL
Sbjct: 417 LPISLVWNVTNTVLLPLFWIIWEVVYAPIRVVAALANCL 455
>At2g27170.1 68415.m06029 structural maintenance of chromosomes
(SMC) family protein similar to basement
membrane-associated chondroitin proteoglycan Bamacan
[Rattus norvegicus] GI:1785540; contains Pfam profile
PF02463: RecF/RecN/SMC N terminal domain. No suitalble
start codon was identified.
Length = 1207
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/84 (20%), Positives = 38/84 (45%)
Frame = +1
Query: 262 RQVEYYFGDVNLHRDKFLQEQIKLDDGWVPLEILTKFNRLAKLTEDTDVIANALNKSTSG 441
+ +EY D LH + EQ+++ E ++R+ K +D+ + +L + T
Sbjct: 221 KSLEYTIYDKELHDAREKLEQVEVARTKASEESTKMYDRVEKAQDDSKSLDESLKELTKE 280
Query: 442 LLEVSEDNKKVRRNPEQPLPEMTR 513
L + ++ + V + L + T+
Sbjct: 281 LQTLYKEKETVEAQQTKALKKKTK 304
>At1g62010.1 68414.m06994 mitochondrial transcription termination
factor-related / mTERF-related contains Pfam profile
PF02536: mTERF
Length = 415
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = -2
Query: 503 SGSGCSGLRLTFLLSSETSNNPLVDLLRAFAMTSVSSVSLARRLNFVRISN 351
S S LRL L+ + +++ ++DLLR++ T S+ R + V I N
Sbjct: 51 SSSFLDSLRLATKLTDKGNSDSVLDLLRSYGFTDSQISSIIRSDSRVLIDN 101
>At1g53440.1 68414.m06057 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 1035
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = -2
Query: 386 LARRLNFVRISNGTHPSSNFICSCR-NLSR-CRFTS 285
L R+ NFV S P+SN C C N S CR T+
Sbjct: 57 LDRKWNFVAESTSKLPTSNITCDCTFNASSVCRVTN 92
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,937,148
Number of Sequences: 28952
Number of extensions: 292390
Number of successful extensions: 1162
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 1042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1147
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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