Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30200
         (570 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    23   2.8  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   6.5  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   8.6  

>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -3

Query: 460 RLKCAFSTYEYNIIFCA*MKTEKYLSK*ERLILFIKI 350
           R + AF TYE  +      KT +YLS  ERL L + +
Sbjct: 10  RARTAF-TYEQLVALENKFKTTRYLSVCERLNLALSL 45


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +2

Query: 26  AIWTLRPMIDSCPVTSCSP 82
           A+W L   I S P+  C P
Sbjct: 162 AVWVLAGAITSPPLLGCFP 180


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +1

Query: 127 LDRCDADDDHRVTLAEWGKCLE 192
           LD    D D  + +A++G C E
Sbjct: 113 LDNVLLDQDGHIKIADFGMCKE 134


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,989
Number of Sequences: 438
Number of extensions: 2390
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)