Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30200
         (570 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g08580.1 68418.m01021 calcium-binding EF hand family protein ...    29   1.7  
At4g20910.1 68417.m03031 double-stranded RNA binding protein-rel...    27   6.7  
At4g11340.1 68417.m01830 Toll-Interleukin-Resistance (TIR) domai...    27   8.8  

>At5g08580.1 68418.m01021 calcium-binding EF hand family protein
           contains INTERPRO:IPR002048 calcium-binding EF-hand
           domain
          Length = 391

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
 Frame = +1

Query: 40  QTNDRFVSRHELFPIRAPLMALEHCIAP-----FLDRCDADDDHRVTLAE 174
           + +D ++S  EL PI + +   EH  A       + + D+D D R+TLAE
Sbjct: 313 KNDDGYLSDVELLPIISKIHPTEHYYAKQQADYIISQADSDKDRRLTLAE 362


>At4g20910.1 68417.m03031 double-stranded RNA binding
           protein-related / DsRBD protein-related contains weak
           similarity to Pfam profile PF00035: Double-stranded RNA
           binding motif
          Length = 942

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +1

Query: 151 DHRVTLAEWGKCLELDELEMEERCDDFNENAEHYFSAPMMLQAPPSY 291
           D R+   + G CLE+ E   E++  +F E     F   +++ + P+Y
Sbjct: 783 DSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPKLLIVSTPNY 829


>At4g11340.1 68417.m01830 Toll-Interleukin-Resistance (TIR)
           domain-containing protein domain signature TIR exists,
           suggestive of a disease resistance protein.
          Length = 495

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = +1

Query: 16  WKWCDLDAQTNDRFVSRHELFPIRAPL-MALEHCIAP-FLDRCDADDDHRVTLAEWGKCL 189
           W +  L+    + F +  +L P    L M  +H +   FL+  DADDD  V +      L
Sbjct: 99  WDFEGLEHNFYEMFATISQLIPFEFSLYMIHQHAVESIFLN--DADDDEWVMIIITHYHL 156

Query: 190 ELDELEMEE 216
           +LD+ EM E
Sbjct: 157 DLDKTEMIE 165


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,276,012
Number of Sequences: 28952
Number of extensions: 169883
Number of successful extensions: 355
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 355
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1102220672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)