Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30199
         (406 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.06 |brx1||ribosome biogenesis protein Brx1|Schizosacchar...    28   0.63 
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    27   1.1  
SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos...    27   1.5  
SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual           25   3.4  
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub...    25   3.4  
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe...    25   4.5  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    25   5.9  
SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch...    25   5.9  
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ...    25   5.9  
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s...    25   5.9  
SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyce...    25   5.9  
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom...    24   7.8  

>SPBC800.06 |brx1||ribosome biogenesis protein
           Brx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 27.9 bits (59), Expect = 0.63
 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
 Frame = +2

Query: 56  IVECGHTFVGTSVNRPLVYHHDVQY-SSKMFRKRVENLHFSLPHVPSIFGRSIQG---IL 223
           +  C + F   S  R  +Y H  +  +    +  VENLH ++  + ++ G +++G   IL
Sbjct: 92  LYNCNNIFFFESRRREDLYLHIARAPNGPTVKFHVENLH-TMDEL-NMTGNALKGSRPIL 149

Query: 224 AFDKTYSTA 250
           +FDKT+ TA
Sbjct: 150 SFDKTFDTA 158


>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 199 EYGRYMRQAEMEVFNSLTEHFRAVLH 122
           E G Y+ +     +N + E FR +LH
Sbjct: 260 EIGAYLAEVSTRAYNGVFERFRTILH 285


>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 721

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +2

Query: 80  VGTSVNRPLVYHHDVQYSSKMFRKRVENLH-FSLPHVPSIFGRSIQGILAFDKTYS 244
           V  ++N   VY H+   SSK F+K ++ LH F       +  R   G+  ++ +++
Sbjct: 336 VNAAMNTVCVYFHEGP-SSKAFQKHIQRLHDFMWVQPEGMLMRGTNGLQVWETSFT 390


>SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 604

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 116 HDVQYSSKMFRKRVENLHFSLP 181
           +D+ ++S +FRKR  + +FS P
Sbjct: 309 YDLFFASPVFRKRTSSFYFSQP 330


>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
           subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 838

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -2

Query: 327 IFDTALALHAEIDEVIADSALGDVPEAVL 241
           + +TA ALH   D+  +D++   +PE+V+
Sbjct: 475 VMETAKALHHGDDDAASDTSYEPLPESVI 503


>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -1

Query: 196 YGRYMRQAEMEVFNSLTEHFRAVLHVMV 113
           YGR M+    E  + + +H+RAV   ++
Sbjct: 649 YGRLMQSEHTETSDMMEQHYRAVTQYLL 676


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 365  EAIIKQKCIHRNEFLIPRSLFMRRLTK 285
            E++  +KCI+RN+ L+   LF   L K
Sbjct: 1061 ESLTIRKCIYRNQELLDLLLFSIHLVK 1087


>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
           oxidase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 155 VENLHFSLPHVPSIFGRSIQGILA 226
           ++NL +SLP V SI   S+ GI++
Sbjct: 107 LQNLGYSLPIVGSISETSVSGIMS 130


>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
           Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = -3

Query: 92  RWCRRKCDRIPRSPQRRVATQRFATSSWQ 6
           RWC   C    R PQ  +   R+  +++Q
Sbjct: 743 RWCMLACSMYARDPQGALTPLRWVFTTFQ 771


>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
           subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 142 HFRAVLHVMVVDQGPIDAGADESVTAFHDHRS 47
           H  ++LH  V+D   +  G+  S  AF + RS
Sbjct: 130 HIASLLHDDVIDHANVRRGSPSSNVAFGNRRS 161


>SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 510

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 8/31 (25%), Positives = 21/31 (67%)
 Frame = +2

Query: 116 HDVQYSSKMFRKRVENLHFSLPHVPSIFGRS 208
           H +++  K+  K+ + + +++ H+P ++GRS
Sbjct: 161 HFLKHYHKVRAKKYDEVLYAVYHLPLVYGRS 191


>SPBC354.13 |rga6||GTPase activating protein
           Rga6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 733

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 143 FRKRVENLHFSLPHVPSIFGRSIQGILAFDKT 238
           F  R  + H ++ H PS+FG+ I G L  D T
Sbjct: 282 FPHRNAHQHNAIAHNPSVFGKPI-GDLTSDPT 312


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,652,569
Number of Sequences: 5004
Number of extensions: 32491
Number of successful extensions: 92
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)