Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30199
         (406 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   2.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   5.3  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    20   9.3  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +1

Query: 166 PFQLASCTFHIREVHSGHSGLRQDL*HCFWNITQGGIGYNFVNLRMKSER 315
           P  L + T  +RE+H  ++GLR DL    +   +  +  N    R+ S+R
Sbjct: 277 PEGLFASTRDLREIHLAYNGLR-DLPKGIFTRLEQLLVLNLAGNRLGSDR 325


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 259 ITQGGIGYNFVNLRMKSERGIKNSL 333
           ITQ G G  F+ ++   ERG   S+
Sbjct: 501 ITQTGTGPAFLTIKEWIERGTTKSM 525


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 6/22 (27%), Positives = 12/22 (54%)
 Frame = +1

Query: 166 PFQLASCTFHIREVHSGHSGLR 231
           P+ + +CT HI     G + ++
Sbjct: 167 PYDILNCTIHIASWSHGSNEIK 188


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,953
Number of Sequences: 438
Number of extensions: 2265
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10132494
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)