Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30198
         (385 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    24   0.60 
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    24   0.60 
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   0.79 
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   0.79 
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    20   9.7  

>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 23.8 bits (49), Expect = 0.60
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +1

Query: 31  QADHPRQVQHHHQVAGFQPTGRQG 102
           Q  HP+  Q HHQ       G+QG
Sbjct: 172 QEQHPQHHQPHHQQQHMMYGGQQG 195


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 23.8 bits (49), Expect = 0.60
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +1

Query: 31  QADHPRQVQHHHQVAGFQPTGRQG 102
           Q  HP+  Q HHQ       G+QG
Sbjct: 174 QEQHPQHHQPHHQQQHMMYGGQQG 197



 Score = 20.2 bits (40), Expect = 7.4
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +1

Query: 34 ADHPRQVQHHHQVAGFQPTGRQ 99
          A+HP Q QH+         GR+
Sbjct: 21 AEHPHQHQHYGAAVQVPQGGRR 42


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.4 bits (48), Expect = 0.79
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = -3

Query: 182 LLRHPGTSSLLSDCKCLPILSACAHTPPCRPVGWNP 75
           +L+ P T     D K LP      H PP  PVG NP
Sbjct: 720 MLQSPLTPHEAFDVK-LPPPPHPHHQPPRNPVGTNP 754


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.4 bits (48), Expect = 0.79
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = -3

Query: 182 LLRHPGTSSLLSDCKCLPILSACAHTPPCRPVGWNP 75
           +L+ P T     D K LP      H PP  PVG NP
Sbjct: 612 MLQSPLTPHEAFDVK-LPPPPHPHHQPPRNPVGTNP 646


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 19.8 bits (39), Expect = 9.7
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 263 VGPRLQPRGRHLRLR 219
           +G +  P  +HLRLR
Sbjct: 204 IGAKKSPPEKHLRLR 218


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,185
Number of Sequences: 336
Number of extensions: 1592
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8014124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)