Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30198
(385 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 70 1e-13
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 69 3e-13
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 44 8e-06
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 29 0.19
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po... 26 1.8
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||... 25 3.1
SPAC1B2.04 |cox6||cytochrome c oxidase subunit VI|Schizosaccharo... 24 7.1
SPAC3A12.07 |rpb11||DNA-directed RNA polymerase II complex subun... 24 9.4
SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase |Sc... 24 9.4
SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc... 24 9.4
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 69.7 bits (163), Expect = 1e-13
Identities = 31/55 (56%), Positives = 39/55 (70%)
Frame = +2
Query: 5 LKEKISDSDKQTILDKCNTTIKWLDSNQLADKEEYEHKQKELEGICNPIITKMYQ 169
LK+K+ SDK+ I TI+WLD N A K+EYE KQKELEG+ NPI+ K+YQ
Sbjct: 556 LKDKVDASDKEAIDKAVKETIEWLDHNTTAAKDEYEDKQKELEGVANPIMAKIYQ 610
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 68.9 bits (161), Expect = 3e-13
Identities = 30/55 (54%), Positives = 40/55 (72%)
Frame = +2
Query: 5 LKEKISDSDKQTILDKCNTTIKWLDSNQLADKEEYEHKQKELEGICNPIITKMYQ 169
LK+K+ SDK+T+ TI+WLDSN A K+E+E KQKELE + NPI+ K+YQ
Sbjct: 556 LKDKVDASDKETVDKAVKETIEWLDSNTTAAKDEFEAKQKELESVANPIMAKIYQ 610
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 44.0 bits (99), Expect = 8e-06
Identities = 19/56 (33%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Frame = +2
Query: 2 KLKEKISDSDKQTILDKCNTTIKWLDSN-QLADKEEYEHKQKELEGICNPIITKMY 166
+L K+ DKQ +LD +WL+ + + A KEE+E ++++L+ + +PI K+Y
Sbjct: 586 QLGGKVDPEDKQAVLDAVEDVAEWLEIHGEDASKEEFEDQRQKLDAVVHPITQKLY 641
>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 29.5 bits (63), Expect = 0.19
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +2
Query: 8 KEKISDSDKQTILD-KCNTTIKWLDSNQLADKEEYEHKQKELE 133
+EKI +++TI D K + + ++ EEY KQKEL+
Sbjct: 427 EEKIDSDEEETIDDAKSEMFVDLSEEEEVRQYEEYRKKQKELQ 469
>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 26.2 bits (55), Expect = 1.8
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 177 EESPEVCRASRAEHPEPE 230
EE+P AS EHPEP+
Sbjct: 244 EEAPAAAAASENEHPEPK 261
>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 25.4 bits (53), Expect = 3.1
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = -3
Query: 188 RGLLRHPGTSSLLSDCKCLPILSA-CAH 108
R ++ H GT + D CLP SA C H
Sbjct: 122 REVVHHEGTCEICYDEGCLPFFSAECDH 149
>SPAC1B2.04 |cox6||cytochrome c oxidase subunit
VI|Schizosaccharomyces pombe|chr 1|||Manual
Length = 140
Score = 24.2 bits (50), Expect = 7.1
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +2
Query: 86 QLADKEEYEHKQKELEGICNPI 151
+L KE+Y+ KEL+ +CN +
Sbjct: 109 KLPTKEQYQAYVKELKPVCNEL 130
>SPAC3A12.07 |rpb11||DNA-directed RNA polymerase II complex subunit
Rpb11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 123
Score = 23.8 bits (49), Expect = 9.4
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 26 SDKQTILDKCNTTIKWLDSNQLADKEEYEHKQKELEGI 139
S KQ I+D + I L+ ++ E+E K +EG+
Sbjct: 81 SPKQVIVDAAKSLITHLEEIKVNFMREWELKMISVEGV 118
>SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 23.8 bits (49), Expect = 9.4
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -1
Query: 196 HTSGDSSGTLVHLRYYRIAN 137
+T+G S LVHL RIAN
Sbjct: 480 YTTGASKEYLVHLEQMRIAN 499
>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
Pre5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 23.8 bits (49), Expect = 9.4
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +3
Query: 168 RVPEESPEVCRASRAEHPEPEVP 236
++ ++ P RASRA EP+ P
Sbjct: 235 KLGDKGPAAARASRAAAEEPQAP 257
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,344,143
Number of Sequences: 5004
Number of extensions: 22501
Number of successful extensions: 93
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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