Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30197
         (623 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0258 - 11153709-11156090                                         31   0.74 
09_02_0036 + 3217163-3217584,3217752-3218322                           30   1.3  
02_05_0244 - 27130502-27130843,27130914-27131019,27132170-27132411     29   4.0  
04_04_1586 - 34621945-34623366                                         28   5.2  
06_01_0092 - 775290-775691                                             28   6.9  
06_03_0812 + 24847716-24847988,24848123-24848221,24848977-248492...    27   9.2  
04_01_0312 + 4206400-4206627,4206661-4207269,4207425-4207902,420...    27   9.2  

>05_03_0258 - 11153709-11156090
          Length = 793

 Score = 31.1 bits (67), Expect = 0.74
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -2

Query: 247 NINAYNLPFAIQXRNCWEGRSVRASSLLRQLAKGGCAARRLSWVT 113
           N+N YNL F +  +   + R      +L ++++ GC   R++W T
Sbjct: 390 NVNTYNLIFGMLGK---KSRFTAMLEMLEEMSRSGCTPNRVTWNT 431


>09_02_0036 + 3217163-3217584,3217752-3218322
          Length = 330

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +1

Query: 61  ITIHWPSFYNVV-TGKTLALPNLIALQH 141
           I+  W  F N+V +G TL++PN + LQH
Sbjct: 69  ISAGWSRFINLVQSGPTLSIPNYVLLQH 96


>02_05_0244 - 27130502-27130843,27130914-27131019,27132170-27132411
          Length = 229

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -1

Query: 602 SARXFRFLPFLSRHVRRLSPSSSKSGAP 519
           SA   R+ PFLSR  +R S  S+ SG P
Sbjct: 193 SATDGRYAPFLSRQPQRSSAGSTHSGKP 220


>04_04_1586 - 34621945-34623366
          Length = 473

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +1

Query: 430 YQGDGPLREPSP*SSFLGSRCRKALNRTLKG 522
           Y    PL +P+  SSF G  C  A+ RTL G
Sbjct: 165 YAQTDPLFDPAASSSFSGVSCGSAICRTLSG 195


>06_01_0092 - 775290-775691
          Length = 133

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = -2

Query: 181 RASSLLRQLAKGGCAARR 128
           RA+SLLRQL + GCAA +
Sbjct: 22  RAASLLRQLIEDGCAAAK 39


>06_03_0812 +
           24847716-24847988,24848123-24848221,24848977-24849229,
           24850064-24850174,24850558-24850694,24850821-24850934,
           24851025-24851224,24851366-24851560,24851636-24851795
          Length = 513

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -2

Query: 517 LGFDLVLYGTSTPKNLIRVMVHVVGHRPDRRF 422
           L   ++L+      +++ V VH+ G RPDRR+
Sbjct: 22  LAMSVMLFVEKVYMSVVLVGVHLFGRRPDRRY 53


>04_01_0312 +
           4206400-4206627,4206661-4207269,4207425-4207902,
           4208006-4208297,4209278-4209569,4210013-4210465
          Length = 783

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +1

Query: 73  WPSFYNVV-TGKTLALPNLIALQH 141
           W  F N+V +G TL+LP  + LQH
Sbjct: 133 WSRFTNLVQSGPTLSLPEYVLLQH 156


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,955,340
Number of Sequences: 37544
Number of extensions: 356331
Number of successful extensions: 849
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)