Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30196
(762 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr 2|... 89 5e-19
SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces pom... 29 0.96
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi... 28 1.7
SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||... 27 3.9
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo... 26 5.1
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 26 6.7
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 26 6.7
SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2... 25 8.9
>SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr
2|||Manual
Length = 212
Score = 89.4 bits (212), Expect = 5e-19
Identities = 40/77 (51%), Positives = 56/77 (72%)
Frame = +1
Query: 277 YLMYVKFKATYDHNHDTFRIEFLLIPTFILALLINHEFTVLEVLWTFSIYLESVAILPQL 456
YLM + + TYD DTFR E++L +LAL+ +T+ +LWTFSI+LESVAILPQL
Sbjct: 76 YLMLMTLRPTYDKRLDTFRTEYILGGCAVLALIYPTSYTISNILWTFSIWLESVAILPQL 135
Query: 457 FLVSKTREAESITSHYL 507
F++ ++ E ES+T+HYL
Sbjct: 136 FMLQRSGETESLTAHYL 152
Score = 63.3 bits (147), Expect = 4e-11
Identities = 30/66 (45%), Positives = 43/66 (65%)
Frame = +3
Query: 489 HYLSLSVALGSYRALYLLNWVYRYVVESHYELIAIISGVVQTILYCDFFYLYITKVLKGK 668
HYL A+ YR LY+ +W+YR V +AI++G++QT+LY DF +Y VL+GK
Sbjct: 150 HYL---FAMCLYRGLYIPHWIYRIAVHKKVIGVAILAGIIQTVLYGDFAVVYRRTVLQGK 206
Query: 669 KLQLPA 686
K +LPA
Sbjct: 207 KFRLPA 212
Score = 53.2 bits (122), Expect = 4e-08
Identities = 29/84 (34%), Positives = 43/84 (51%)
Frame = +2
Query: 53 MNIFRLLGDXXXXXXXXXXXXXXWKSRSCAGISGKSQILFSVVYTTRYLDLLTTHVSPYN 232
M F LGD KS++C+G+S KS +LF +VY TRYL+L + S Y
Sbjct: 1 MTFFSALGDMAHLAAIFLLLHRMKKSKTCSGLSLKSHLLFLLVYVTRYLNLFWRYKSLYY 60
Query: 233 TVMKLVFTLPPMQLFI*CMSSLRP 304
+M++VF + + +LRP
Sbjct: 61 FLMRIVFIASESYICYLMLMTLRP 84
>SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 304
Score = 28.7 bits (61), Expect = 0.96
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +1
Query: 247 GVHFTSYATIYLMYVKFKATYDHNHD-TFRIEFLLIPTFILALLINHEFTVLEVLWTFSI 423
G + SYA+I++ + + +YD +D + I LI FI L+ TV L FS+
Sbjct: 159 GCFWLSYASIFIPWFNIQNSYDDPNDFNYAIGLYLICWFIFTFLV-LLCTVRSTLAFFSL 217
Query: 424 YL 429
++
Sbjct: 218 FM 219
>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 798
Score = 27.9 bits (59), Expect = 1.7
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = -1
Query: 642 KGKRNHSTE-LSAQHPR*SLSTHSETPQHNGKPSSRGTELYMNLKQQIMRGNAF 484
K N+STE LS +HP + HS P + S G + + K + R N+F
Sbjct: 538 KSAINNSTEDLSKKHP----ALHSSRPSDSRSRSKFGNDYQSHSKHNLFRKNSF 587
>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 498
Score = 26.6 bits (56), Expect = 3.9
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -2
Query: 719 KTFKQILSKNLSWQL*FLSLQHFRNVKVKEITVQ 618
KT+ Q KN +W+L + +Q +VK ++I Q
Sbjct: 400 KTYPQTKKKNRNWRLKTIGMQKAEDVKKQDIERQ 433
>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 536
Score = 26.2 bits (55), Expect = 5.1
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = +1
Query: 184 HDTLFGSTYNSCVPV*HCHEVGVHFTSYATIYLMYVKFKATYD 312
HD + N HC + G F ++ ++Y + + ATYD
Sbjct: 141 HDPMCDKLLNFINGHIHCRKCGYIFCNFHSMYQIKLSIHATYD 183
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 25.8 bits (54), Expect = 6.7
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +3
Query: 465 FKNKRGRKHYLSLSVALGSYRALYL-LNWVYRYVVESHYELI 587
F K R+ S+SV S RA+ NW YR +++ Y +I
Sbjct: 306 FSEKLSRERK-SISVDKTSKRAILAPTNWAYREIIDIDYHII 346
>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 687
Score = 25.8 bits (54), Expect = 6.7
Identities = 9/38 (23%), Positives = 19/38 (50%)
Frame = +3
Query: 546 WVYRYVVESHYELIAIISGVVQTILYCDFFYLYITKVL 659
W+Y Y +HY A++ +VQ L++ +++
Sbjct: 469 WLYVYACFAHYFSFALVLALVQQFAKIQTILLFVIEII 506
>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 683
Score = 25.4 bits (53), Expect = 8.9
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = +3
Query: 507 VALGSYRALYLLNWVYRYVVESHYELIAIISGVVQTI 617
VALG+ Y++NW+ + + + + GV T+
Sbjct: 530 VALGASYGGYMINWIQGHPLGRQFRALVCHDGVFNTL 566
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,225,039
Number of Sequences: 5004
Number of extensions: 68232
Number of successful extensions: 156
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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