Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30196
(762 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0652 - 18424489-18424525,18424639-18424702,18424796-184248... 95 7e-20
11_04_0279 + 15722183-15722273,15722927-15722986,15724053-157243... 91 9e-19
05_06_0163 - 26082276-26082369,26082751-26082814,26082899-260829... 81 1e-15
09_06_0073 + 20687057-20687246,20689004-20689203,20689786-206899... 64 9e-11
08_02_1489 + 27490143-27490365,27490731-27490732,27491606-274916... 61 8e-10
03_02_0917 + 12372122-12372422,12372487-12372524,12373103-123731... 29 4.0
09_02_0561 + 10681056-10682285,10682546-10682764 28 7.1
03_06_0563 - 34738732-34738890,34738965-34739009,34739154-347392... 28 7.1
06_01_0809 - 6100025-6100251,6100456-6100565,6100919-6100986,610... 28 9.3
>04_03_0652 -
18424489-18424525,18424639-18424702,18424796-18424869,
18425809-18425924,18426078-18426343,18427659-18427749
Length = 215
Score = 94.7 bits (225), Expect = 7e-20
Identities = 40/70 (57%), Positives = 57/70 (81%)
Frame = +1
Query: 298 KATYDHNHDTFRIEFLLIPTFILALLINHEFTVLEVLWTFSIYLESVAILPQLFLVSKTR 477
+ +YD +HDTFR +FL++P F+LALLI+ +FT EV+WTFSIYLE+VAILPQL L+ +TR
Sbjct: 85 RRSYDKDHDTFRHQFLVLPCFLLALLIHEKFTFREVMWTFSIYLEAVAILPQLVLLQRTR 144
Query: 478 EAESITSHYL 507
+++T Y+
Sbjct: 145 NVDNLTGQYV 154
Score = 74.5 bits (175), Expect = 8e-14
Identities = 34/58 (58%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Frame = +3
Query: 513 LGSYRALYLLNWVYRYVVESHY-ELIAIISGVVQTILYCDFFYLYITKVLKGKKLQLP 683
LG+YRALY+LNW YRY E HY I ISG VQT+LY DFFY Y+ + KL LP
Sbjct: 157 LGAYRALYILNWAYRYFTEPHYVHWITWISGFVQTLLYADFFYYYLNSLKNNVKLTLP 214
Score = 63.7 bits (148), Expect = 2e-10
Identities = 30/67 (44%), Positives = 41/67 (61%)
Frame = +2
Query: 53 MNIFRLLGDXXXXXXXXXXXXXXWKSRSCAGISGKSQILFSVVYTTRYLDLLTTHVSPYN 232
MN FRL GD +SCAG+S K+Q L+++V+ TRYLD+ T +S YN
Sbjct: 1 MNAFRLAGDMTHIMSVLVLLLKIHTIKSCAGVSLKTQELYALVFATRYLDIFTDFISLYN 60
Query: 233 TVMKLVF 253
TVMK++F
Sbjct: 61 TVMKMIF 67
>11_04_0279 +
15722183-15722273,15722927-15722986,15724053-15724318,
15724771-15724886,15725173-15725246,15725330-15725393,
15725473-15725509
Length = 235
Score = 91.1 bits (216), Expect = 9e-19
Identities = 40/70 (57%), Positives = 52/70 (74%)
Frame = +1
Query: 298 KATYDHNHDTFRIEFLLIPTFILALLINHEFTVLEVLWTFSIYLESVAILPQLFLVSKTR 477
+ TYD +HDTFR FL++P LALLIN FT EV+W FSIYLE+VAILPQL L+ +TR
Sbjct: 105 RRTYDKDHDTFRHHFLVLPCLALALLINERFTFREVMWAFSIYLEAVAILPQLVLLQRTR 164
Query: 478 EAESITSHYL 507
+++T Y+
Sbjct: 165 NIDNLTGQYV 174
Score = 74.5 bits (175), Expect = 8e-14
Identities = 32/59 (54%), Positives = 42/59 (71%), Gaps = 1/59 (1%)
Frame = +3
Query: 513 LGSYRALYLLNWVYRYVVESHY-ELIAIISGVVQTILYCDFFYLYITKVLKGKKLQLPA 686
LG+YR LY+LNW+YRY E H+ I+ ++G+VQT+LY DFFY YI KL+LPA
Sbjct: 177 LGAYRVLYILNWIYRYFTEPHFVHWISWVAGIVQTLLYADFFYYYIMSWKNNVKLELPA 235
Score = 46.8 bits (106), Expect = 2e-05
Identities = 22/37 (59%), Positives = 28/37 (75%)
Frame = +2
Query: 143 GISGKSQILFSVVYTTRYLDLLTTHVSPYNTVMKLVF 253
GIS K+Q L+++V+ RYLDL +S YNTVMKLVF
Sbjct: 51 GISLKTQELYALVFAARYLDLFIHFISLYNTVMKLVF 87
>05_06_0163 -
26082276-26082369,26082751-26082814,26082899-26082972,
26083644-26083759,26084644-26084909,26085002-26085092
Length = 234
Score = 80.6 bits (190), Expect = 1e-15
Identities = 38/85 (44%), Positives = 56/85 (65%), Gaps = 2/85 (2%)
Frame = +1
Query: 259 TSYATIYLM--YVKFKATYDHNHDTFRIEFLLIPTFILALLINHEFTVLEVLWTFSIYLE 432
+S A ++ M + + + TYD + DTFR L+ F+LALL N FT E+ W FSIYLE
Sbjct: 70 SSAAIVWCMRRHPQVRRTYDKDQDTFRHVVLVAAAFVLALLFNERFTFREICWAFSIYLE 129
Query: 433 SVAILPQLFLVSKTREAESITSHYL 507
+VAILPQL L+ ++R +++T Y+
Sbjct: 130 AVAILPQLVLLQRSRNVDNLTGQYV 154
Score = 63.3 bits (147), Expect = 2e-10
Identities = 28/67 (41%), Positives = 42/67 (62%)
Frame = +2
Query: 53 MNIFRLLGDXXXXXXXXXXXXXXWKSRSCAGISGKSQILFSVVYTTRYLDLLTTHVSPYN 232
MN FR LGD + ++SC+G+S K+Q L+ +V+ RY+DL T ++S YN
Sbjct: 1 MNAFRFLGDMTHLFSVLVLLLKIYATKSCSGVSRKTQELYMLVFVARYMDLFTDYISLYN 60
Query: 233 TVMKLVF 253
+VMK+VF
Sbjct: 61 SVMKVVF 67
Score = 63.3 bits (147), Expect = 2e-10
Identities = 27/45 (60%), Positives = 33/45 (73%), Gaps = 1/45 (2%)
Frame = +3
Query: 513 LGSYRALYLLNWVYRYVVESHY-ELIAIISGVVQTILYCDFFYLY 644
LG+YRA Y+LNW+YRY E H+ I I+G+VQT LY DFFY Y
Sbjct: 157 LGAYRAFYILNWIYRYFTEGHHSRWIPWIAGLVQTALYADFFYYY 201
>09_06_0073 +
20687057-20687246,20689004-20689203,20689786-20689926,
20689995-20690075,20690564-20690688,20690763-20690807,
20691853-20691877,20692282-20693073
Length = 532
Score = 64.5 bits (150), Expect = 9e-11
Identities = 30/81 (37%), Positives = 51/81 (62%), Gaps = 3/81 (3%)
Frame = +1
Query: 274 IYLMYVKFKATYDHNHDTFRIEFLLIPTFILALLINHEFT---VLEVLWTFSIYLESVAI 444
IY++ K + TY + D F + ++++P +LALLI+ + V + W F +YLE+V++
Sbjct: 107 IYMIRFKLRPTYMVDKDNFALYYVVVPCAVLALLIHPSTSHNIVNRISWAFCVYLEAVSV 166
Query: 445 LPQLFLVSKTREAESITSHYL 507
LPQL L+ T+ E T+HY+
Sbjct: 167 LPQLRLMQNTKIVEPFTAHYV 187
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +3
Query: 585 IAIISGVVQTILYCDFFYLYITKVLKGK-KLQLPA 686
+ ++S +VQT + DF Y Y+ ++ G+ L+LP+
Sbjct: 224 MVLLSEIVQTFILADFCYYYVKSLVGGQLVLRLPS 258
>08_02_1489 +
27490143-27490365,27490731-27490732,27491606-27491651,
27491892-27492091,27492505-27492645,27492730-27492810,
27493353-27493477,27493552-27493600
Length = 288
Score = 61.3 bits (142), Expect = 8e-10
Identities = 28/81 (34%), Positives = 51/81 (62%), Gaps = 3/81 (3%)
Frame = +1
Query: 274 IYLMYVKFKATYDHNHDTFRIEFLLIPTFILALLINHEFT---VLEVLWTFSIYLESVAI 444
IY++ K ++TY + D F + ++++P LALL++ + + + W F +YLE+V++
Sbjct: 134 IYMIRFKLRSTYMLDKDNFALYYVVLPCAGLALLVHPSTSHNIINRISWAFCVYLEAVSV 193
Query: 445 LPQLFLVSKTREAESITSHYL 507
LPQL L+ T+ E T+HY+
Sbjct: 194 LPQLRLMQNTKIVEPFTAHYV 214
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +3
Query: 585 IAIISGVVQTILYCDFFYLYITKVLKGK-KLQLPA 686
+ ++S +VQT + DF Y Y+ V G+ L+LP+
Sbjct: 251 MVLLSEIVQTFILADFCYYYVKSVFGGQLVLRLPS 285
>03_02_0917 +
12372122-12372422,12372487-12372524,12373103-12373186,
12373796-12374504,12374641-12374729,12374834-12374903,
12374977-12375060,12375097-12375239,12375337-12375418,
12375605-12375687,12375769-12375835,12376287-12376376,
12377631-12377737,12377862-12377969
Length = 684
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 342 KFNPECVMVVIIGGLKLDIHQINSCIG 262
K+ PEC V +I L LD+ +I C+G
Sbjct: 364 KYTPECA-VHVIKSLGLDVEKIKKCVG 389
>09_02_0561 + 10681056-10682285,10682546-10682764
Length = 482
Score = 28.3 bits (60), Expect = 7.1
Identities = 19/54 (35%), Positives = 32/54 (59%)
Frame = +1
Query: 349 IPTFILALLINHEFTVLEVLWTFSIYLESVAILPQLFLVSKTREAESITSHYLL 510
+P+F+LA +HE VL + T S +L++V +PQ+ + EA S+T L+
Sbjct: 433 LPSFLLAE--SHEAYVLHPIVTDSTHLKAVTTVPQMAAI---HEAFSLTPENLV 481
>03_06_0563 -
34738732-34738890,34738965-34739009,34739154-34739201,
34739291-34739386,34739467-34739534,34739633-34739690,
34739783-34739869,34740004-34740051,34740360-34740416,
34740525-34740783,34740877-34741102,34741168-34741275,
34741885-34741987
Length = 453
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Frame = +3
Query: 396 FGGIVDFFHLFG--ICRYSTSTVPGFKNKRGRKHYLSLSV 509
FGG + +FG IC Y+T V K G+ H + V
Sbjct: 139 FGGETPYSIMFGPDICGYATKKVHAILTKNGKNHLIKKDV 178
>06_01_0809 -
6100025-6100251,6100456-6100565,6100919-6100986,
6101108-6101229,6101446-6101527,6101629-6101695,
6102811-6102883,6103032-6103148,6104167-6104259,
6104430-6104495,6105121-6105218,6105917-6106016,
6106486-6106660,6106828-6106894,6107574-6107712,
6107830-6107926,6107992-6108130,6108212-6108363
Length = 663
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 400 EVLWTFSIYLESVAILPQLFLVSKTREAESITSHY 504
EV+WT S+ + + Q F T+EAE + S Y
Sbjct: 542 EVMWTLSMLRRYIHYVKQHFKPVLTKEAERVISSY 576
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,513,759
Number of Sequences: 37544
Number of extensions: 398700
Number of successful extensions: 730
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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