Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30196
         (762 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54357| Best HMM Match : ER_lumen_recept (HMM E-Value=1.6e-19)       87   1e-17
SB_5372| Best HMM Match : ER_lumen_recept (HMM E-Value=2.5e-19)        85   6e-17
SB_42144| Best HMM Match : v110 (HMM E-Value=5.2)                      29   5.5  
SB_36190| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_54357| Best HMM Match : ER_lumen_recept (HMM E-Value=1.6e-19)
          Length = 147

 Score = 87.4 bits (207), Expect = 1e-17
 Identities = 39/57 (68%), Positives = 45/57 (78%)
 Frame = +3

Query: 489 HYLSLSVALGSYRALYLLNWVYRYVVESHYELIAIISGVVQTILYCDFFYLYITKVL 659
           HYL    ALG+YRALY+ NWVYRY  E  Y+ IAI++G VQT LYCDFFYLYITKV+
Sbjct: 33  HYL---FALGAYRALYIANWVYRYYFEGFYDFIAIVAGCVQTALYCDFFYLYITKVI 86



 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 32/35 (91%), Positives = 34/35 (97%)
 Frame = +1

Query: 403 VLWTFSIYLESVAILPQLFLVSKTREAESITSHYL 507
           VLWTFSIYLESVAILPQLF++SKT EAESITSHYL
Sbjct: 1   VLWTFSIYLESVAILPQLFMISKTGEAESITSHYL 35


>SB_5372| Best HMM Match : ER_lumen_recept (HMM E-Value=2.5e-19)
          Length = 229

 Score = 85.0 bits (201), Expect = 6e-17
 Identities = 41/73 (56%), Positives = 53/73 (72%)
 Frame = +1

Query: 190 TLFGSTYNSCVPV*HCHEVGVHFTSYATIYLMYVKFKATYDHNHDTFRIEFLLIPTFILA 369
           T F S YNS + V +         ++AT+YLMY+KFKATYD NHDTFR+EFLLIP   LA
Sbjct: 129 TSFVSLYNSVMKVIYIS------CAFATLYLMYIKFKATYDSNHDTFRVEFLLIPVAGLA 182

Query: 370 LLINHEFTVLEVL 408
            L+NHEFT++E++
Sbjct: 183 CLVNHEFTIMELI 195



 Score = 59.7 bits (138), Expect = 3e-09
 Identities = 24/44 (54%), Positives = 39/44 (88%)
 Frame = +2

Query: 122 WKSRSCAGISGKSQILFSVVYTTRYLDLLTTHVSPYNTVMKLVF 253
           ++S S +G+SGKSQ++F++V++TRYLDL T+ VS YN+VMK+++
Sbjct: 100 FESESSSGVSGKSQMMFALVFSTRYLDLFTSFVSLYNSVMKVIY 143


>SB_42144| Best HMM Match : v110 (HMM E-Value=5.2)
          Length = 226

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 286 YVKFKATYDHNHDTFRIEFLLIPTFILALLI 378
           Y KF  + DH    FR  F L+P   L L++
Sbjct: 6   YAKFSDSVDHRVKVFRWPFWLLPLLFLCLIL 36


>SB_36190| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 993

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
 Frame = +1

Query: 364 LALLINHEFTVLEVLWTFSIYLESVAILPQL-FLVSKTREAES 489
           LA L++HE  V+E+L       +S+A+ P L FLV+  R+ ++
Sbjct: 74  LAQLVHHETQVIEILKKHLQISDSLALEPLLDFLVNLARDLQN 116


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,487,561
Number of Sequences: 59808
Number of extensions: 490097
Number of successful extensions: 963
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)