Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30195
         (630 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    25   0.52 
AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory recept...    23   2.1  
AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory recept...    23   2.1  

>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 25.0 bits (52), Expect = 0.52
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -2

Query: 197 PNHFSTFRRRGFTMRMSTAKCLKFLL 120
           PN ++ F  + +T +    KC+K+L+
Sbjct: 33  PNFYNDFEVQRYTWKCENQKCVKYLV 58


>AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory receptor
           candidate 56 protein.
          Length = 358

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
 Frame = -3

Query: 556 RYIKTIQEL--SDILILDVVDCWMRAAELETSSKELPSMINSSFCLGELTTVTPGAIFTL 383
           R  K I +L  S + I D V    + A L     +   MIN +FC+ +L  +T   I  +
Sbjct: 239 RKSKEISKLPKSMLAISDPVFIVDQVAALHIKLTDTAHMINYAFCVQQLLRITVAFISIV 298

Query: 382 LMYF 371
              F
Sbjct: 299 TALF 302


>AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory receptor
           candidate 21 protein.
          Length = 386

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
 Frame = -3

Query: 556 RYIKTIQEL--SDILILDVVDCWMRAAELETSSKELPSMINSSFCLGELTTVTPGAIFTL 383
           R  K I +L  S + I D V    + A L     +   MIN +FC+ +L  +T   I  +
Sbjct: 239 RKSKEISKLPKSMLAISDPVFIVDQVAALHIKLTDTAHMINYAFCVQQLLRITVAFISIV 298

Query: 382 LMYF 371
              F
Sbjct: 299 TALF 302


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,343
Number of Sequences: 336
Number of extensions: 2995
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16188355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)