Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30193
         (307 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    21   2.2  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        20   5.1  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    20   6.7  

>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
          5-like protein protein.
          Length = 162

 Score = 21.4 bits (43), Expect = 2.2
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 59 CGYQSPLTSQYE 94
          CGY SPL S ++
Sbjct: 39 CGYHSPLESNHK 50


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 20.2 bits (40), Expect = 5.1
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 149 IPVLKVLRRANMSFTANRL 205
           IP+ +  RR+  +FTA++L
Sbjct: 214 IPLKRKQRRSRTTFTAHQL 232


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 19.8 bits (39), Expect = 6.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 152 PVLKVLRRANMSFTANRLYHAI 217
           PVL   +   MSF++ R  H+I
Sbjct: 218 PVLASYKSVPMSFSSPRRRHSI 239


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,133
Number of Sequences: 336
Number of extensions: 978
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  5518292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)