Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30193
         (307 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      25   0.098
SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces pombe...    24   4.4  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    24   5.8  

>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -1

Query: 307 FFFFFFFFFXXXKF 266
           FFFFFFFF    +F
Sbjct: 78  FFFFFFFFSHCRRF 91



 Score = 24.6 bits (51), Expect(2) = 0.098
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 304 FFFFFFFFXXXKFSN*LFTA 245
           FF FFF+F    F + LFT+
Sbjct: 107 FFCFFFYFSLFSFFSFLFTS 126



 Score = 23.8 bits (49), Expect(2) = 0.098
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = -1

Query: 307 FFFFFFFFF 281
           +FFFFFFFF
Sbjct: 77  WFFFFFFFF 85


>SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 590

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -3

Query: 107 IGGWAHIVMSEGFGNHSKVVIQ-H*KNIL 24
           I  +++IV   GF    K+V Q H  NIL
Sbjct: 520 INAYSYIVSGNGFNEDRKIVFQPHVSNIL 548


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +2

Query: 137  SYNCIPVLKVLRRANMSFTANRLYH 211
            ++     L+VLR  N++ T+ R++H
Sbjct: 1044 AFRAFKALRVLRLINLTQTSQRMFH 1068


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,002,552
Number of Sequences: 5004
Number of extensions: 16275
Number of successful extensions: 29
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)