Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30193
(307 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0496 + 14706959-14707020,14707173-14707538,14708070-147082... 27 2.2
05_05_0233 + 23496405-23496932,23497346-23497621,23497747-23497938 26 5.1
10_01_0122 + 1495426-1495815 26 6.7
08_01_0332 + 2971361-2971439,2971596-2971783,2971985-2972062,297... 26 6.7
01_07_0378 - 43167805-43169152,43169258-43169326,43169473-431695... 26 6.7
12_01_0918 + 9072774-9072863,9073385-9073539,9073834-9074213,907... 25 8.9
01_06_1750 + 39651202-39651295,39651815-39651888,39653611-39653892 25 8.9
>05_03_0496 +
14706959-14707020,14707173-14707538,14708070-14708209,
14708319-14708566,14708814-14708946,14709096-14709159,
14709284-14709380,14709505-14709607,14709702-14709838,
14710063-14710152,14710240-14710401
Length = 533
Score = 27.5 bits (58), Expect = 2.2
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = -1
Query: 307 FFFFFFFFFXXXKFS 263
FFFFFFFFF FS
Sbjct: 95 FFFFFFFFFFFFFFS 109
Score = 25.8 bits (54), Expect = 6.7
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -1
Query: 307 FFFFFFFFF 281
FFFFFFFFF
Sbjct: 87 FFFFFFFFF 95
Score = 25.8 bits (54), Expect = 6.7
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -1
Query: 307 FFFFFFFFF 281
FFFFFFFFF
Sbjct: 88 FFFFFFFFF 96
Score = 25.8 bits (54), Expect = 6.7
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -1
Query: 307 FFFFFFFFF 281
FFFFFFFFF
Sbjct: 89 FFFFFFFFF 97
Score = 25.8 bits (54), Expect = 6.7
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -1
Query: 307 FFFFFFFFF 281
FFFFFFFFF
Sbjct: 90 FFFFFFFFF 98
Score = 25.8 bits (54), Expect = 6.7
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -1
Query: 307 FFFFFFFFF 281
FFFFFFFFF
Sbjct: 91 FFFFFFFFF 99
Score = 25.8 bits (54), Expect = 6.7
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -1
Query: 307 FFFFFFFFF 281
FFFFFFFFF
Sbjct: 92 FFFFFFFFF 100
Score = 25.8 bits (54), Expect = 6.7
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -1
Query: 307 FFFFFFFFF 281
FFFFFFFFF
Sbjct: 93 FFFFFFFFF 101
Score = 25.8 bits (54), Expect = 6.7
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -1
Query: 307 FFFFFFFFF 281
FFFFFFFFF
Sbjct: 94 FFFFFFFFF 102
>05_05_0233 + 23496405-23496932,23497346-23497621,23497747-23497938
Length = 331
Score = 26.2 bits (55), Expect = 5.1
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -1
Query: 307 FFFFFFFFFXXXKFS 263
FFFFFFFFF + S
Sbjct: 76 FFFFFFFFFFFDRAS 90
Score = 25.8 bits (54), Expect = 6.7
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -1
Query: 307 FFFFFFFFF 281
FFFFFFFFF
Sbjct: 62 FFFFFFFFF 70
Score = 25.8 bits (54), Expect = 6.7
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -1
Query: 307 FFFFFFFFF 281
FFFFFFFFF
Sbjct: 63 FFFFFFFFF 71
Score = 25.8 bits (54), Expect = 6.7
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -1
Query: 307 FFFFFFFFF 281
FFFFFFFFF
Sbjct: 64 FFFFFFFFF 72
Score = 25.8 bits (54), Expect = 6.7
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -1
Query: 307 FFFFFFFFF 281
FFFFFFFFF
Sbjct: 65 FFFFFFFFF 73
Score = 25.8 bits (54), Expect = 6.7
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -1
Query: 307 FFFFFFFFF 281
FFFFFFFFF
Sbjct: 66 FFFFFFFFF 74
Score = 25.8 bits (54), Expect = 6.7
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -1
Query: 307 FFFFFFFFF 281
FFFFFFFFF
Sbjct: 67 FFFFFFFFF 75
Score = 25.8 bits (54), Expect = 6.7
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -1
Query: 307 FFFFFFFFF 281
FFFFFFFFF
Sbjct: 68 FFFFFFFFF 76
Score = 25.8 bits (54), Expect = 6.7
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -1
Query: 307 FFFFFFFFF 281
FFFFFFFFF
Sbjct: 69 FFFFFFFFF 77
Score = 25.8 bits (54), Expect = 6.7
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -1
Query: 307 FFFFFFFFF 281
FFFFFFFFF
Sbjct: 70 FFFFFFFFF 78
Score = 25.8 bits (54), Expect = 6.7
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -1
Query: 307 FFFFFFFFF 281
FFFFFFFFF
Sbjct: 71 FFFFFFFFF 79
Score = 25.8 bits (54), Expect = 6.7
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -1
Query: 307 FFFFFFFFF 281
FFFFFFFFF
Sbjct: 72 FFFFFFFFF 80
Score = 25.8 bits (54), Expect = 6.7
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -1
Query: 307 FFFFFFFFF 281
FFFFFFFFF
Sbjct: 73 FFFFFFFFF 81
Score = 25.8 bits (54), Expect = 6.7
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -1
Query: 307 FFFFFFFFF 281
FFFFFFFFF
Sbjct: 74 FFFFFFFFF 82
Score = 25.8 bits (54), Expect = 6.7
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -1
Query: 307 FFFFFFFFF 281
FFFFFFFFF
Sbjct: 75 FFFFFFFFF 83
>10_01_0122 + 1495426-1495815
Length = 129
Score = 25.8 bits (54), Expect = 6.7
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -1
Query: 307 FFFFFFFFF 281
FFFFFFFFF
Sbjct: 14 FFFFFFFFF 22
Score = 25.8 bits (54), Expect = 6.7
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -1
Query: 307 FFFFFFFFF 281
FFFFFFFFF
Sbjct: 15 FFFFFFFFF 23
>08_01_0332 +
2971361-2971439,2971596-2971783,2971985-2972062,
2972354-2972425,2972513-2972631,2972858-2972942,
2973096-2973185,2973268-2973369,2973448-2973624,
2973874-2973954,2974511-2974582,2974662-2974756,
2974831-2974919,2975016-2975078,2975161-2975204,
2975554-2975685
Length = 521
Score = 25.8 bits (54), Expect = 6.7
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -1
Query: 307 FFFFFFFFF 281
FFFFFFFFF
Sbjct: 305 FFFFFFFFF 313
>01_07_0378 -
43167805-43169152,43169258-43169326,43169473-43169544,
43169677-43169745,43169979-43171161,43171239-43171365
Length = 955
Score = 25.8 bits (54), Expect = 6.7
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -1
Query: 307 FFFFFFFFF 281
FFFFFFFFF
Sbjct: 16 FFFFFFFFF 24
Score = 25.8 bits (54), Expect = 6.7
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -1
Query: 307 FFFFFFFFF 281
FFFFFFFFF
Sbjct: 17 FFFFFFFFF 25
Score = 25.8 bits (54), Expect = 6.7
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -1
Query: 307 FFFFFFFFF 281
FFFFFFFFF
Sbjct: 18 FFFFFFFFF 26
>12_01_0918 +
9072774-9072863,9073385-9073539,9073834-9074213,
9074299-9075273,9076001-9076134
Length = 577
Score = 25.4 bits (53), Expect = 8.9
Identities = 8/28 (28%), Positives = 19/28 (67%)
Frame = -3
Query: 137 ILFRQSSHLKIGGWAHIVMSEGFGNHSK 54
++ ++S + I G+ ++++GFGN+ K
Sbjct: 471 LIAKESHPMHIHGFNFFILAQGFGNYDK 498
>01_06_1750 + 39651202-39651295,39651815-39651888,39653611-39653892
Length = 149
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 123 ELSSQDRWLGSYCDVRGLW*PQQSGHSALKKHT*D 19
E ++ WLG+ C RG +SGH A +H D
Sbjct: 21 ERPARGLWLGADCAERGREKGGRSGHPARHRHRRD 55
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,193,297
Number of Sequences: 37544
Number of extensions: 98645
Number of successful extensions: 226
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 363831720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -