Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30193
         (307 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g41540.1 68418.m05048 disease resistance protein (TIR-NBS-LRR...    27   1.9  
At5g16020.1 68418.m01873 stress protein-related contains weak si...    26   5.7  
At3g29340.1 68416.m03684 zinc finger (C2H2 type) family protein ...    25   7.6  

>At5g41540.1 68418.m05048 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1038

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +3

Query: 87  NMSPATYLEMRALSK*DRTTAFPSLRS*DEQI*ALQQIGCIMLSI 221
           N+S AT LE   L K       PS  S  +++ AL   GC ML +
Sbjct: 644 NLSNATNLETLTLIKCSSLVELPSSISNLQKLKALMMFGCKMLKV 688


>At5g16020.1 68418.m01873 stress protein-related contains weak
           similarity to Swiss-Prot:P18899 stress protein (DNA
           damage-responsive protein 48) (DDRP 48) (YP 75)
           (Flocculent specific protein) [Saccharomyces cerevisiae]
          Length = 641

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = -1

Query: 307 FFFFFFFFF 281
           FFFFFFFFF
Sbjct: 13  FFFFFFFFF 21


>At3g29340.1 68416.m03684 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 650

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 131 FRQSSHLKIGGWAHIVMSEGFGNHSKV 51
           ++ S H KI G +  V S+G GNH +V
Sbjct: 194 WKSSCHCKICGKS-FVCSQGLGNHKRV 219


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,151,309
Number of Sequences: 28952
Number of extensions: 85174
Number of successful extensions: 164
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 311361520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)