Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30192
         (738 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48657| Best HMM Match : GST_C (HMM E-Value=5.8e-07)                 87   2e-17
SB_7437| Best HMM Match : PAS (HMM E-Value=7.2e-14)                    31   0.97 
SB_45212| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_19860| Best HMM Match : GST_C (HMM E-Value=9.6e-10)                 30   2.3  
SB_16159| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_25676| Best HMM Match : TSP_1 (HMM E-Value=0.0055)                  29   3.0  
SB_55889| Best HMM Match : REJ (HMM E-Value=5.4e-07)                   29   3.9  
SB_51364| Best HMM Match : DUF1431 (HMM E-Value=5.9)                   29   5.2  
SB_51564| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  
SB_36561| Best HMM Match : BACK (HMM E-Value=1.4013e-45)               28   9.1  
SB_17448| Best HMM Match : RVT_1 (HMM E-Value=0.00044)                 28   9.1  
SB_32980| Best HMM Match : DEAD (HMM E-Value=0)                        28   9.1  
SB_20744| Best HMM Match : CH (HMM E-Value=0.92)                       28   9.1  

>SB_48657| Best HMM Match : GST_C (HMM E-Value=5.8e-07)
          Length = 203

 Score = 86.6 bits (205), Expect = 2e-17
 Identities = 42/77 (54%), Positives = 52/77 (67%)
 Frame = +3

Query: 9   MAAGVLYTYPENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFES 188
           MAAG LYTYP++FRA K LIAA+YSGT ++V P F FG+ N + +FLKKFP GKVPAFE+
Sbjct: 1   MAAGKLYTYPDSFRAQKILIAAEYSGTKIEV-PAFTFGKDNHTAEFLKKFPLGKVPAFET 59

Query: 189 ADGKVLLTESNAIAYYV 239
                       +  YV
Sbjct: 60  KTANACTRAMPLLTTYV 76



 Score = 72.1 bits (169), Expect = 4e-13
 Identities = 31/67 (46%), Positives = 49/67 (73%)
 Frame = +2

Query: 293 WASWSDSELLPASCAWVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTERI 472
           + +++D ELLPA+  WVFP  G+MQ++KQ+ ++A  D+   + +L+  LL +TFLV ER+
Sbjct: 75  YVNFADQELLPAAATWVFPTYGMMQYHKQSTDKAMEDVKKYMTMLNDVLLMKTFLVGERV 134

Query: 473 TLADVIV 493
           TLAD+ V
Sbjct: 135 TLADIAV 141


>SB_7437| Best HMM Match : PAS (HMM E-Value=7.2e-14)
          Length = 505

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 19/76 (25%), Positives = 32/76 (42%)
 Frame = +3

Query: 42  NFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADGKVLLTESN 221
           N   +K +   Q   +  K+ P  V GE N   + +KK     +P      GK +  + +
Sbjct: 105 NIGKFKMVWIDQIDESTKKLKPKMVAGEDNGFVNAIKKVSLEDIPEGNGPSGKAIREKRS 164

Query: 222 AIAYYVANESLAEEIW 269
            I   + N+SL   +W
Sbjct: 165 IIVNDIENDSLM-NLW 179


>SB_45212| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1304

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +2

Query: 341 VFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTERITLAD 484
           ++P +   Q    NV+R  +DL  + K+     L R F V E  T AD
Sbjct: 73  IYPNIMDEQIRTANVQRGSADLQTSAKITLKKFLPRCFSVIESTTSAD 120


>SB_19860| Best HMM Match : GST_C (HMM E-Value=9.6e-10)
          Length = 260

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
 Frame = +2

Query: 248 KSRGGDLATQARVWQWASWSDSELLPASCAWVFPYLGIMQFNKQNVERAK--SDLLAALK 421
           K  G DL  + +V QW   +  +   A  A      G      ++VE AK  +D+   L 
Sbjct: 75  KLYGSDLFQRGQVDQWLDITTCDFEAAVAAVAIAKEG------RDVEGAKIVADINKFLG 128

Query: 422 VLDGHLLTRTFLVTERITLADVIV 493
            ++ HL  R FLV + +T+AD  V
Sbjct: 129 FVEKHLAGRKFLVGDSVTIADFSV 152


>SB_16159| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 351

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 251 SRGGDLATQARVWQWASWSDSELLPASCA 337
           ++  DL T A+V+ WA W   ++   SCA
Sbjct: 74  TKSPDLTTTAQVYSWAMWEPWQMRNLSCA 102


>SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4554

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
 Frame = +3

Query: 102  APNFVFGET---NKSEDFLKKFPAGKVPAFE---SADGKVL-LTESNAIAYYVANESLAE 260
            +PN +F      + +E +L  F +G   + E   SA+G++  L     +A  ++++   E
Sbjct: 1798 SPNKMFNTAAPQSSNEVWLTSFCSGHSLSVELAASAEGQLNGLVSQAGVASLLSSQGFRE 1857

Query: 261  EIWLPKPVSGSGHHGL 308
             +W P+PVSG     L
Sbjct: 1858 GLWKPEPVSGEAFSSL 1873


>SB_25676| Best HMM Match : TSP_1 (HMM E-Value=0.0055)
          Length = 141

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 251 SRGGDLATQARVWQWASWSDSELLPASCA 337
           ++  DL T A+V+ WA W   ++   SCA
Sbjct: 74  TKSPDLTTTAQVYSWAMWEPWQMRNLSCA 102


>SB_55889| Best HMM Match : REJ (HMM E-Value=5.4e-07)
          Length = 2008

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
 Frame = +3

Query: 84   GTDVKVAPNFVFGETNKSEDF---LKKFPAGKVPAFESADGKVLLTESNAIAYYVANESL 254
            GT   V P+  F  T+  E     + K  A  +P  E+ D  +L   +NA    +A  +L
Sbjct: 1428 GTKADVPPS-AFCSTDPCEPVAASIAKPSAALIPPGETIDPNML---TNAEGQKIAVNNL 1483

Query: 255  AEEIWLPKPVSGSGHHGLT 311
            AE I +  P+SGS   G T
Sbjct: 1484 AEPIVISLPISGSSPPGNT 1502


>SB_51364| Best HMM Match : DUF1431 (HMM E-Value=5.9)
          Length = 364

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -1

Query: 171 LFRQETSSRSLRTCWSRQIRNSVLLSHQSRNIVRRSTLYK 52
           +FR +  + +     S ++ N V +SHQSR IV   T+ K
Sbjct: 102 VFRSKQQAPNKAVGRSDEVTNEVAVSHQSRRIVESETVRK 141


>SB_51564| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 327

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 1/108 (0%)
 Frame = -1

Query: 330 EAGSSSLSDHDAHCQTRAWVARSPPRDFHWQRSKRWHCFQLGA-PFHRHFRMQALFRQET 154
           ++ + S+ DHD H      +   PP + H +R      ++LG   + RH R +++ RQ T
Sbjct: 122 DSNNRSIHDHDYHWAIENVIPPPPPLEGHVERES----YELGRHDYMRHIR-ESISRQST 176

Query: 153 SSRSLRTCWSRQIRNSVLLSHQSRNIVRRSTLYKRGSFPDKCKVPRPP 10
               L    + + R  + LSH   N+ RR   ++  +  D  + P PP
Sbjct: 177 LP-PLDYIQAYR-RAFIALSH---NVQRREWNWESDAQYDVNQRPPPP 219


>SB_36561| Best HMM Match : BACK (HMM E-Value=1.4013e-45)
          Length = 554

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +2

Query: 359 IMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTERITLADVIV 493
           +M + K +VE  K DL   L+ +   LLTR FL+ + +   D+I+
Sbjct: 194 VMSWIKHDVESRKKDLANLLEHIRFPLLTRKFLI-DTVAKEDLIM 237


>SB_17448| Best HMM Match : RVT_1 (HMM E-Value=0.00044)
          Length = 890

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 25/67 (37%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = +3

Query: 174 PAFESADGKVLLTESNA-IAYYVANESLAEEIWLPKPVSGSGHHGLTANYCLLPALGSSL 350
           P F+S   KVLLT  N+  A+Y  N  L E I            GLTA +C L     S 
Sbjct: 425 PLFKSVRNKVLLTVKNSKRAFY--NNKLCENI-------NDFFIGLTAGFCPLSPSDVSD 475

Query: 351 TLVSCNS 371
             V C S
Sbjct: 476 VYVDCQS 482


>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
          Length = 985

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
 Frame = +1

Query: 436 SSHTHLPC--YRENHTCRCHCLQYT 504
           S +T  PC  Y+   TC C C+ YT
Sbjct: 873 SHYTPFPCPHYQGGPTCECQCMGYT 897


>SB_20744| Best HMM Match : CH (HMM E-Value=0.92)
          Length = 1103

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = +3

Query: 555  KRSALVPDRRXPAAS--VGRRRLAHASVRLPPTYDPKKYQELAGAQNKKEGKKRLRSVKR 728
            KR+ +   +R  +AS  VGRRR+  +   LP  YD   +  ++    K+  K++ R + R
Sbjct: 844  KRTPVRDRKRSASASPVVGRRRMDESEAILPVLYDEFPFLHVSPHTAKEMWKRQSRHLSR 903


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,027,525
Number of Sequences: 59808
Number of extensions: 537443
Number of successful extensions: 1555
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1550
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)