Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30191
         (725 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    26   0.36 
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   4.4  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   4.4  
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           21   7.7  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 720 SAAMRRNEFTRNRGTFVKQH 661
           S+A RR EF R+  TF+KQ+
Sbjct: 269 SSANRRREFIRSAITFIKQY 288


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +2

Query: 380 HSYPGLIPNLSQFTTSESAQAGVPQAPG 463
           + YP L P +SQ   S    +  P +PG
Sbjct: 172 YPYPILSPEMSQVAASWHTPSMYPLSPG 199


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +2

Query: 380 HSYPGLIPNLSQFTTSESAQAGVPQAPG 463
           + YP L P +SQ   S    +  P +PG
Sbjct: 64  YPYPILSPEMSQVAASWHTPSMYPLSPG 91


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 86  DNLQYQFFPVSSGSVQFKVRAAND 157
           DNLQY F    SG++ + +    D
Sbjct: 201 DNLQYSFDNQCSGTIDWALPKQED 224


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,664
Number of Sequences: 336
Number of extensions: 3818
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19363530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)