Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30191
         (725 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyc...    30   0.29 
SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr 3||...    29   0.51 
SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces pombe...    27   3.6  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    26   4.8  
SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    26   4.8  
SPAC23A1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   6.3  

>SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 585

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 20/68 (29%), Positives = 31/68 (45%)
 Frame = -3

Query: 345 AAIPTNPKTTIFPSVKNSGAFNFNLIGLGSIFLMTLLAFPQPPIITSYIGSDSCGPVVSA 166
           AA  T      FP       F   +  + S+F+++LL     P +TSY G D+   V++ 
Sbjct: 292 AAAETENPAKAFPVAVRQTLFRIAIFYILSLFIVSLLISGADPRLTSYHGVDASPFVLAI 351

Query: 165 MWASFAAL 142
             A+  AL
Sbjct: 352 KDANIKAL 359


>SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = -1

Query: 398 SDQDMNGIASPS---RPAEIMPLSQRTQKPRYSP 306
           SD ++ G+  P    +PA  +PLS+R+  P Y+P
Sbjct: 30  SDPELIGLLKPDNVDKPANSIPLSKRSTSPSYAP 63


>SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = +1

Query: 448 ATGSWKIEVPPTAPVAAALYEHPLATLEATEETHPLRLEEPVYGLMFQEVKYLLAP 615
           ATG+W   + P           P+A ++ T E +   L  PVY L F    Y+  P
Sbjct: 204 ATGAWTASLLPNDHTRFLATGQPVAYIKLTPEEYIRFLTNPVY-LDFDTGFYIFPP 258


>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1588

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 524  PWRLRRKRTPSVWRSR 571
            PW  R + TPSVW S+
Sbjct: 1511 PWNTRPRSTPSVWLSQ 1526


>SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 343

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 411 ERFGIRPGYEWNSFTLASSGDNAAIP 334
           E+ G R GY+ +S   ASS  N+ IP
Sbjct: 155 EKMGYRGGYQMHSTPWASSPRNSTIP 180


>SPAC23A1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +2

Query: 209 VMIGGWGNAKSVIRKIEPSPIRLKLKAPEF 298
           V + GW  AKS+I K+ PS  RL    P F
Sbjct: 57  VFLTGWA-AKSIIVKLLPSLWRLSTLIPSF 85


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,911,082
Number of Sequences: 5004
Number of extensions: 65117
Number of successful extensions: 187
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)