Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30191
(725 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0604 - 16132173-16132391,16132488-16132556,16132824-161328... 35 0.057
02_04_0452 + 23044190-23045227 31 0.70
06_01_0172 + 1362101-1363708 31 0.93
04_04_0578 + 26353830-26353929,26354030-26354277,26354539-26354931 31 0.93
01_06_0837 - 32328191-32328369,32328682-32328731,32328844-323289... 29 2.8
03_06_0417 - 33782577-33782687,33782996-33783052,33783110-337832... 29 3.8
12_01_0628 - 5181814-5182344 29 5.0
07_03_1536 - 27537394-27537576,27537837-27538073,27538164-275390... 29 5.0
07_01_0776 + 5983684-5983857,5983962-5984072,5984151-5984302,598... 29 5.0
07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753... 28 6.6
04_04_1411 + 33375988-33376045,33376161-33376551,33376830-333769... 28 6.6
11_06_0221 - 21387365-21387652,21387892-21389952,21390360-21390395 28 8.7
11_02_0015 - 7355989-7357092 28 8.7
03_05_1060 - 30023407-30023553,30024274-30024390,30024958-300251... 28 8.7
>05_03_0604 -
16132173-16132391,16132488-16132556,16132824-16132898,
16132981-16133113,16133188-16133297,16133360-16133407,
16133657-16133983,16135006-16135233,16135360-16135689,
16135780-16136586
Length = 781
Score = 35.1 bits (77), Expect = 0.057
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Frame = +1
Query: 274 VEIESPGILNGGEYRGFWVRWDSGIIS--AGREGEAIPFISWSDPEP-FPVYYVGVCTGW 444
V++ G+ ++ +W+ G+IS GR W DP+P V YVG+ +
Sbjct: 88 VDVAGIGLCCSSSFQSYWISIYDGLISIGQGRHPNNNILFQWLDPDPNRNVQYVGLSSWD 147
Query: 445 GATGSWKIEVPPTAPVAAALY 507
G I + P+AP + L+
Sbjct: 148 KHVGYRNISLMPSAPQNSILW 168
>02_04_0452 + 23044190-23045227
Length = 345
Score = 31.5 bits (68), Expect = 0.70
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +1
Query: 409 FPVYYVGVCTGWGATGSWK-IEVPPTAPVAAALYEHPLATL 528
FPV G G G W + +PP AAA ++ PL TL
Sbjct: 114 FPVPAAAGFPGGGGGGCWPWVNIPPQGAAAAASHQQPLNTL 154
>06_01_0172 + 1362101-1363708
Length = 535
Score = 31.1 bits (67), Expect = 0.93
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Frame = +2
Query: 278 KLKAPEFLTEGNIVVFGFVGIAALSPLDARVKLFHSYPGL--IPNLSQFTTSESAQAGVP 451
KL L NI++ G VGI LDA +K+ PGL P++ +TT SA G
Sbjct: 186 KLYITPNLVSCNILLKGLVGIG---DLDAALKVLDEMPGLGITPDVVTYTTVLSAYCGKG 242
Query: 452 QAPGKSK 472
G K
Sbjct: 243 DIEGAQK 249
>04_04_0578 + 26353830-26353929,26354030-26354277,26354539-26354931
Length = 246
Score = 31.1 bits (67), Expect = 0.93
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +1
Query: 298 LNGGEYRGFWVRWDSGIISAGREGEAIPFISWSDPEP 408
L G +R WV W +I AG G F+ PEP
Sbjct: 195 LVGWNWRHHWVYWLGPLIGAGMAGALYEFVMAEQPEP 231
>01_06_0837 -
32328191-32328369,32328682-32328731,32328844-32328923,
32329193-32329345,32329505-32329654,32329877-32330000,
32330086-32330198,32330287-32330420,32330566-32331232
Length = 549
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Frame = +1
Query: 286 SPGILNGGEYRGF---WVRWDSGIISAGREGEAIPFISWSDPEPFPVYY 423
SP +L GG Y G W+R I+ G + P + + D P ++Y
Sbjct: 211 SPVVLFGGSYGGMLAAWMRLKYPHIAVGALASSAPILQFEDVVPSTIFY 259
>03_06_0417 -
33782577-33782687,33782996-33783052,33783110-33783205,
33783252-33783284,33783543-33783599,33783968-33784060,
33784308-33784395,33784812-33784835,33784956-33785164
Length = 255
Score = 29.1 bits (62), Expect = 3.8
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +2
Query: 311 NIVVFGFVGIAALSPLDARVKLFHSY-PGLIPNLSQFTTSESAQAGVPQAPGKSKCHRL 484
N VVF V I ++ +++LF P N QF T E ++G+PQ + HR+
Sbjct: 36 NPVVFFDVTIGSIPAGRIKMELFADIVPKTAENFRQFCTGEHRKSGLPQGYKGCQFHRV 94
>12_01_0628 - 5181814-5182344
Length = 176
Score = 28.7 bits (61), Expect = 5.0
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 724 VKRSHEKERVYQESWHLRETARATYRG 644
VK + V+Q +WH R TAR +RG
Sbjct: 133 VKHGAQPTVVWQRAWHGRRTARLEWRG 159
>07_03_1536 -
27537394-27537576,27537837-27538073,27538164-27539078,
27540028-27540282,27540872-27540940,27542743-27542805,
27542833-27542901,27542962-27542997
Length = 608
Score = 28.7 bits (61), Expect = 5.0
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 466 IEVPPTAPVAAALYEHPLATLEATEETHP 552
++ PP APVA + PLA L+ T + P
Sbjct: 108 VDEPPGAPVARLQAQRPLAPLQVTTQAPP 136
>07_01_0776 +
5983684-5983857,5983962-5984072,5984151-5984302,
5984403-5984460,5984568-5984616,5984714-5984958,
5985129-5985206,5986016-5986246
Length = 365
Score = 28.7 bits (61), Expect = 5.0
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +1
Query: 400 PEPFPVYYVGVCTGWGATGSWKIEVP-PTAPVAAA 501
P PFP+Y+ G + A S VP PTA AA
Sbjct: 73 PVPFPMYHPGAAAAYYAHASMAAGVPYPTAEAMAA 107
>07_03_0481 - 18572206-18574314,18574591-18575185,18575304-18575371,
18577344-18577458,18578179-18578333,18578673-18580621,
18580691-18581372,18581550-18581621,18582558-18583199,
18583301-18583402,18585011-18585100
Length = 2192
Score = 28.3 bits (60), Expect = 6.6
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +2
Query: 326 GFVGIAALSPLDA-RVKLFHSYPGLIPNLSQFTTSESAQAGVPQAPGKS 469
G +G+ S D+ +K S P L PNLS T++E + VP+ P S
Sbjct: 1515 GKLGLPNFSLEDSIPLKHLKSVPDLFPNLSLGTSNEYLRNCVPELPNSS 1563
>04_04_1411 +
33375988-33376045,33376161-33376551,33376830-33376912,
33377209-33377297,33377481-33377554,33377768-33377818,
33377861-33377900,33378567-33378593,33379191-33379874
Length = 498
Score = 28.3 bits (60), Expect = 6.6
Identities = 20/59 (33%), Positives = 24/59 (40%)
Frame = +1
Query: 358 GREGEAIPFISWSDPEPFPVYYVGVCTGWGATGSWKIEVPPTAPVAAALYEHPLATLEA 534
G E + P + G C G G++G V TAP AA LYE L L A
Sbjct: 28 GAAAELAAIAGAAPPPKLEDFLGGGCNG-GSSGGACPPVQTTAPTAAELYESELKFLAA 85
>11_06_0221 - 21387365-21387652,21387892-21389952,21390360-21390395
Length = 794
Score = 27.9 bits (59), Expect = 8.7
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Frame = -1
Query: 395 DQDMNGIASPSRPAEIMPLS-QR----TQKPRYSPPLRIP 291
D+ + SP+ PA P S QR Q PRY PPLR P
Sbjct: 324 DRAASPARSPASPARRGPQSPQRRVSPAQSPRYQPPLRKP 363
>11_02_0015 - 7355989-7357092
Length = 367
Score = 27.9 bits (59), Expect = 8.7
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Frame = +2
Query: 248 RKIEPSP-----IRLKLKAPEFLTEGNIVVFGFVGIAALSPLDARVKLFHS 385
R+ +P P +RL LKA ++ T+ G + ALS LD RV F S
Sbjct: 13 RRTKPKPPMSRLMRLSLKAVDWATDATRRADGTLNRLALSVLDPRVPAFSS 63
>03_05_1060 -
30023407-30023553,30024274-30024390,30024958-30025129,
30026116-30026198,30026299-30026917,30027157-30027280,
30027637-30027745,30028214-30028399,30028716-30028763,
30028808-30028979,30029034-30029209
Length = 650
Score = 27.9 bits (59), Expect = 8.7
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 427 GVCTGWGATGSWKIEVPPTAPVAAALYEHPLATLEAT 537
GV G G+ + +PP AP AAA+ P+ + E T
Sbjct: 422 GVLHGKAHEGAPSMALPPPAPSAAAMLSPPVPSKERT 458
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,105,472
Number of Sequences: 37544
Number of extensions: 479575
Number of successful extensions: 1493
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1493
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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