Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30191
         (725 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g49760.1 68414.m05580 polyadenylate-binding protein, putative...    29   2.4  
At3g52460.1 68416.m05769 hydroxyproline-rich glycoprotein family...    29   4.1  
At2g30600.2 68415.m03729 BTB/POZ domain-containing protein conta...    28   5.5  
At2g30600.1 68415.m03728 BTB/POZ domain-containing protein conta...    28   5.5  
At1g07810.1 68414.m00846 calcium-transporting ATPase 1, endoplas...    28   5.5  
At1g07670.1 68414.m00824 calcium-transporting ATPase 4, endoplas...    28   5.5  
At4g38770.1 68417.m05490 proline-rich family protein (PRP4) simi...    28   7.2  
At2g47850.1 68415.m05972 zinc finger (CCCH-type) family protein ...    27   9.6  
At1g49430.1 68414.m05541 long-chain-fatty-acid--CoA ligase / lon...    27   9.6  
At1g08980.1 68414.m01001 amidase family protein similar to compo...    27   9.6  

>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
           PABP, putative similar to poly(A)-binding protein
           GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
          Length = 671

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 19/64 (29%), Positives = 30/64 (46%)
 Frame = -3

Query: 708 RRNEFTRNRGTFVKQHEPHTGALLSSPVLPQRRQEVLDLLKHQPIYRLLQTEGVRFLRSL 529
           +R     N    V+Q EP + A ++  +L   + EVL LL+     +   TE +  LRS+
Sbjct: 589 QRTMLGENLYPLVEQLEPESAAKVTGMLLEMDQTEVLHLLESPEALKAKVTEAMDVLRSV 648

Query: 528 QGSQ 517
              Q
Sbjct: 649 AQQQ 652


>At3g52460.1 68416.m05769 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 300

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -1

Query: 413 GKGSGSDQDMNGIASPSRPAEIMPLSQRTQKPRYSPPLRIPG 288
           G G  S++D+N    P  P +  P   +TQ+  Y P +  PG
Sbjct: 16  GPGQNSERDIN--QPPPPPPQSQPPPPQTQQQTYPPVMGYPG 55


>At2g30600.2 68415.m03729 BTB/POZ domain-containing protein contains
           Pfam PF00651: BTB/POZ domain; contains Interpro
           IPR000210/ PS50097: BTBB/POZ domain; similar to MigA
           (GI:1841872) [Dictyostelium discoideum]
          Length = 809

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
 Frame = +1

Query: 310 EYRGFWVRWDSGIISAGREGEAIPF----ISWSDPEP-FPVYYVGVCTGW 444
           E++ +W+    G+IS G+     PF      W DP+P   V YVG+ + W
Sbjct: 101 EFQSYWISIYDGLISIGK--GRYPFQNLVFKWQDPKPNCNVQYVGL-SSW 147


>At2g30600.1 68415.m03728 BTB/POZ domain-containing protein contains
           Pfam PF00651: BTB/POZ domain; contains Interpro
           IPR000210/ PS50097: BTBB/POZ domain; similar to MigA
           (GI:1841872) [Dictyostelium discoideum]
          Length = 809

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
 Frame = +1

Query: 310 EYRGFWVRWDSGIISAGREGEAIPF----ISWSDPEP-FPVYYVGVCTGW 444
           E++ +W+    G+IS G+     PF      W DP+P   V YVG+ + W
Sbjct: 101 EFQSYWISIYDGLISIGK--GRYPFQNLVFKWQDPKPNCNVQYVGL-SSW 147


>At1g07810.1 68414.m00846 calcium-transporting ATPase 1, endoplasmic
           reticulum-type (ECA1) identical to SP|P92939
           Calcium-transporting ATPase 1, endoplasmic
           reticulum-type (EC 3.6.3.8) {Arabidopsis thaliana);
           contains InterPro Accession IPR006069: Cation
           transporting ATPase
          Length = 1061

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -3

Query: 669 KQHEPHTGALLSSPVLPQRRQEVLDLLKHQPIYRLLQTEGV 547
           K H   TG LL S   P+ +QE++ LLK       +  +GV
Sbjct: 693 KNHLRQTGGLLFSRAEPKHKQEIVRLLKEDGEVVAMTGDGV 733


>At1g07670.1 68414.m00824 calcium-transporting ATPase 4, endoplasmic
           reticulum-type (ECA4) identical to SP|Q9XES1
           Calcium-transporting ATPase 4, endoplasmic
           reticulum-type (EC 3.6.3.8) {Arabidopsis thaliana);
           contains InterPro Accession IPR006069: Cation
           transporting ATPase
          Length = 775

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -3

Query: 669 KQHEPHTGALLSSPVLPQRRQEVLDLLKHQPIYRLLQTEGV 547
           K H   TG LL S   P+ +QE++ LLK       +  +GV
Sbjct: 407 KNHLRQTGGLLFSRAEPKHKQEIVRLLKEDGEVVAMTGDGV 447


>At4g38770.1 68417.m05490 proline-rich family protein (PRP4) similar
           to proline-rich protein [Arabidopsis thaliana]
           gi|6782442|gb|AAF28388; contains proline-rich extensin
           domains, INTERPRO:IPR002965
          Length = 448

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 359 PAEIMPLSQRTQKPRYSPPLRIP 291
           P E+ P  ++   P+YSPP+ +P
Sbjct: 171 PLELPPFLKKPCPPKYSPPVEVP 193


>At2g47850.1 68415.m05972 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 468

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +2

Query: 332 VGIAALSPLDARVKLFHSYPGLIPNLSQFTTSESAQAGVPQAPGKSKC 475
           VG  +L  +        S PG+ P+LS  T     +   P+ PG+ +C
Sbjct: 248 VGATSLYGVTQLTSTTPSLPGVYPSLSSPTGVIQKEQAFPERPGEPEC 295


>At1g49430.1 68414.m05541 long-chain-fatty-acid--CoA ligase /
           long-chain acyl-CoA synthetase nearly identical to acyl
           CoA synthetase (MF45P) GI:1617268 from [Brassica napus]
          Length = 665

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 387 YEWNSFTLASSGDNAAIPTNPKTTIFPSVKNSG 289
           + WN F+L  + D A +P   KT I   +  SG
Sbjct: 201 FSWNEFSLMGNLDEANLPRKRKTDICTIMYTSG 233


>At1g08980.1 68414.m01001 amidase family protein similar to
           component of chloroplast outer membrane translocon Toc64
           [Pisum sativum] GI:7453538; contains Pfam profile
           PF01425: Amidase; supporting cDNA
           gi|11493701|gb|AF202077.1|AF202077
          Length = 425

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
 Frame = -3

Query: 711 MRRNEFTRNRGTFVKQHEPHTGALLSSPVLPQRRQEVLDLLKHQPIY-RLLQTEGVRFLR 535
           ++R+EF  N G ++   +P  G     P + +R +E +     +  + R +++E +  L 
Sbjct: 284 LQRHEFKINHGAWISSVKPEFG-----PGISERIEEAIRTSDEKIDHCRSVKSELITALS 338

Query: 534 SLQGSQGVLV 505
           +L G +GVLV
Sbjct: 339 TLLGEKGVLV 348


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,637,722
Number of Sequences: 28952
Number of extensions: 359920
Number of successful extensions: 1152
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1152
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)