Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30189
         (410 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein Mud1|Schizosacch...    25   3.5  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    25   4.6  
SPBC4F6.15c |swi10|rad23|DNA repair endonuclease|Schizosaccharom...    25   6.1  
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce...    24   8.0  

>SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein
           Mud1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = +1

Query: 73  IEFTEELEDRKPEAGRPRRYTGHGRRANPGQQASAAPPNIRNDTR 207
           I F  E E  K  A        HG    P  +ASA+ PN ++ TR
Sbjct: 223 IPFLGESEIPKLLANVEPSANAHGLGIEPASKASASSPNPQSGTR 267


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +2

Query: 53  SREAEDVLNLLKNLKIANQRLGDHDGTPATVAEQTQDNKLVLHPQIYET 199
           S E E  L+ LKN K   +R+G     P  ++E T    L LH  + ++
Sbjct: 815 SVEGEITLSGLKNPKNLRKRIGYVRKNPLFISEYTVRETLRLHAALRQS 863


>SPBC4F6.15c |swi10|rad23|DNA repair
           endonuclease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 252

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +1

Query: 100 RKPEAGRPRRYTGHGRRANPGQQASAAPPNIRN 198
           ++P   +  R T H    NP Q+ +   P++RN
Sbjct: 28  QQPTPQKVSRVTAHSILVNPRQKGNPLLPHVRN 60


>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 297

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +1

Query: 67  GRIEFTEELEDRKPEAGRPRRYTGHGRRAN 156
           GR+   ++ +  +P +  P +Y G+ RR N
Sbjct: 169 GRVLNVQKAKRSRPHSPTPGKYMGYDRRRN 198


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,428,665
Number of Sequences: 5004
Number of extensions: 26903
Number of successful extensions: 77
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)