Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30189
         (410 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1044 - 25649296-25649730                                         29   1.4  
12_01_0978 + 9908001-9908175,9908538-9908619,9910793-9910904,991...    28   3.3  
08_02_0077 - 11979497-11979654,11980012-11982178                       28   3.3  
06_03_0455 + 20978658-20978677,20979104-20979608                       28   3.3  
10_03_0012 - 7037088-7037282,7037453-7037954,7038079-7038081,704...    27   5.8  
05_03_0163 + 9070781-9071320                                           27   5.8  
04_03_0978 - 21385894-21386097,21386330-21386791,21387580-21387786     27   5.8  
09_02_0430 - 9313768-9314259,9314347-9315299,9316875-9317022           27   7.7  
05_06_0099 + 25572530-25573603,25574178-25574633,25575165-25575449     27   7.7  
02_04_0321 + 22020126-22020431,22020520-22021626                       27   7.7  
02_02_0351 + 9257204-9261388                                           27   7.7  
01_06_0344 - 28576568-28576699,28576881-28576961,28577036-285771...    27   7.7  
01_05_0033 + 17390571-17390894,17394152-17394199,17394479-173945...    27   7.7  

>12_02_1044 - 25649296-25649730
          Length = 144

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -3

Query: 234 ALYLAALLPPRIVSYIWGCSTSLLSWVCSATVAGVPSWSPSL 109
           +L +A ++PP   S   GC+   + +  ++T  G  SW+P L
Sbjct: 101 SLSVAEVMPPVKASRAHGCTECGVEFDSASTYGGTTSWAPRL 142


>12_01_0978 +
           9908001-9908175,9908538-9908619,9910793-9910904,
           9911965-9913737
          Length = 713

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +1

Query: 67  GRIEFTEELEDRKPEAGRPR-RYTGHGRRANPGQQASAAPPNIRND 201
           G +    E E +K    +P      HG  ++P Q+ASA   N +ND
Sbjct: 624 GELRRWREKEQKKAAEAQPAPEAQAHGTASSPVQKASAGKANEKND 669


>08_02_0077 - 11979497-11979654,11980012-11982178
          Length = 774

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 20/59 (33%), Positives = 27/59 (45%)
 Frame = -3

Query: 264 GYNEQSSVKSALYLAALLPPRIVSYIWGCSTSLLSWVCSATVAGVPSWSPSLWFAIFKF 88
           GY +  S   A   A+ +    V+ +WG  T L        + G+PSW  SL  AI KF
Sbjct: 642 GYMKDMSSDEAFEQASSIRSH-VNILWG--TILYERSVVEFILGLPSWEESLTVAIEKF 697


>06_03_0455 + 20978658-20978677,20979104-20979608
          Length = 174

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 97  DRKPEAGRPRRYTGHGRRANPGQQASAAPP 186
           + +PEAG      G G  A  GQ+A+ A P
Sbjct: 31  EERPEAGAEAAVGGRGSEAGGGQRAAGAEP 60


>10_03_0012 -
           7037088-7037282,7037453-7037954,7038079-7038081,
           7040633-7041213
          Length = 426

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +1

Query: 115 GRPRRYTGHGRRANPGQQASAAPP 186
           G  RR  GHGR  + GQ  +  PP
Sbjct: 9   GHRRRNNGHGRHHHHGQPTAPPPP 32


>05_03_0163 + 9070781-9071320
          Length = 179

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +1

Query: 115 GRPRRYTGHGRRANPGQQASA 177
           GR RR TG GR   PG+ A+A
Sbjct: 45  GRSRRGTGRGRWPEPGEGAAA 65


>04_03_0978 - 21385894-21386097,21386330-21386791,21387580-21387786
          Length = 290

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +3

Query: 123 TTVHRPRSPSKPRTTS*CCTPKYTKRYAAAVALLNIAR 236
           T +HRPR+ + P +T    +P  + R  A  +LL++ R
Sbjct: 16  TYLHRPRTLAPPASTPARLSPSSSSRRPATPSLLSLRR 53


>09_02_0430 - 9313768-9314259,9314347-9315299,9316875-9317022
          Length = 530

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +2

Query: 128 GTPATVAEQTQDNKLVLHPQIYETIRGGSSAAKYSALLT 244
           G PA       ++ L   P I++++  G+SAA YS+++T
Sbjct: 294 GIPAFQQLSGMNSILFYSPVIFQSLGFGNSAALYSSIIT 332


>05_06_0099 + 25572530-25573603,25574178-25574633,25575165-25575449
          Length = 604

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 59  EAEDVLNLLKNLKIANQRLGDHDGTPATVAEQTQD 163
           E   V+ +LKNLK A  R G  D  P+T  ++  D
Sbjct: 541 EFSQVVQILKNLKEALDRDGTLDKIPSTNCQEPPD 575


>02_04_0321 + 22020126-22020431,22020520-22021626
          Length = 470

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -1

Query: 266 VVITSRVALKARYI*QRYCRRVSFRIFGGAALACCPGFA 150
           VV  + +A  A  +  RY RR  F + GG  L C  G A
Sbjct: 280 VVSLASIAAAALTV-DRYGRRTLFMVGGGVLLVCLTGMA 317


>02_02_0351 + 9257204-9261388
          Length = 1394

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +2

Query: 50  ESREAEDVLNLLKNLKIANQRLGDHDGTP 136
           ++ EAEDVL+ L+   I +Q  G H+ TP
Sbjct: 75  QADEAEDVLDELQYFIIQDQIDGTHEATP 103


>01_06_0344 -
           28576568-28576699,28576881-28576961,28577036-28577131,
           28578862-28579038,28579633-28580130
          Length = 327

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 17/42 (40%), Positives = 20/42 (47%)
 Frame = +2

Query: 2   YEVALTTFIKVDYANGESREAEDVLNLLKNLKIANQRLGDHD 127
           YE  L    K+ Y N   RE E V NL K    AN+ +G  D
Sbjct: 256 YEELLELGDKIGYVNTGLREDEIVRNLRKEEFEANEEMGRLD 297


>01_05_0033 +
           17390571-17390894,17394152-17394199,17394479-17394526,
           17395224-17395400,17395492-17395642,17395742-17395828,
           17397236-17397360,17397608-17397726,17399983-17400082,
           17400188-17400223
          Length = 404

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +2

Query: 116 GDHDGTPATVAEQTQDNKLVLH-PQIYETIRGGSSAAKYSAL 238
           G   G PA    + + N  + H PQ Y  +RG  + A YSAL
Sbjct: 32  GRPSGAPACADRRLRLNPNMEHKPQDYSDVRGEYAPAVYSAL 73


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,116,850
Number of Sequences: 37544
Number of extensions: 175946
Number of successful extensions: 607
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)