Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30189
(410 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_14000| Best HMM Match : DUF1213 (HMM E-Value=0.71) 31 0.37
SB_57710| Best HMM Match : bZIP_1 (HMM E-Value=0.32) 28 3.4
SB_24444| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.4
SB_29796| Best HMM Match : 7tm_1 (HMM E-Value=1.6e-08) 28 3.4
SB_47760| Best HMM Match : DUF1168 (HMM E-Value=2.1) 27 4.5
SB_40697| Best HMM Match : ABC_tran (HMM E-Value=7.1e-07) 27 4.5
SB_58944| Best HMM Match : fn3 (HMM E-Value=0.88) 27 4.5
SB_34187| Best HMM Match : ABC_tran (HMM E-Value=1.49995e-41) 27 6.0
SB_49264| Best HMM Match : Ank (HMM E-Value=3.7e-22) 27 7.9
SB_26677| Best HMM Match : AT_hook (HMM E-Value=3.1) 27 7.9
SB_46755| Best HMM Match : zf-C2H2 (HMM E-Value=1.09301e-43) 27 7.9
>SB_14000| Best HMM Match : DUF1213 (HMM E-Value=0.71)
Length = 1281
Score = 31.1 bits (67), Expect = 0.37
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +1
Query: 82 TEELEDRKPEAGRPRRYTGHGRRANPGQQASAAPPNIRNDTRR 210
T +L+D+ +A RPR + +R+ P + +A P R T++
Sbjct: 192 TSKLQDQDKQAARPREASHKTKRSKPQDKQAARPKQPRRKTKK 234
>SB_57710| Best HMM Match : bZIP_1 (HMM E-Value=0.32)
Length = 584
Score = 27.9 bits (59), Expect = 3.4
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +2
Query: 2 YEVALTTFIKVDYANGESREAEDVLNLLKNLK 97
YEVAL +K Y N ++ +AE V L +NLK
Sbjct: 462 YEVALAN-LKSRYENDKAVQAESVAQLKRNLK 492
>SB_24444| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 268
Score = 27.9 bits (59), Expect = 3.4
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +2
Query: 47 GESREAEDVLNLLKNLKIANQRLGDHDG-TPATVAEQTQDNKLVLHPQIYETIRGGSSAA 223
G S+E +V+ LKN K +RLG G T + + +++HP +++ GS A
Sbjct: 126 GYSKEQAEVIQRLKNAKDHYERLGIQQGATKDDINRAYKKLAVLIHPD--KSVAPGSEEA 183
Query: 224 KYSALLTL 247
+ AL +L
Sbjct: 184 -FKALSSL 190
>SB_29796| Best HMM Match : 7tm_1 (HMM E-Value=1.6e-08)
Length = 362
Score = 27.9 bits (59), Expect = 3.4
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -3
Query: 369 LSNLYCISHKFNAKLLFFSRTFLVKTPKYLF*NLC 265
+ +L+ ++ A ++FF + FLVK YL +LC
Sbjct: 19 VQSLFIVAVNTIALIVFFRKEFLVKKSNYLLMSLC 53
>SB_47760| Best HMM Match : DUF1168 (HMM E-Value=2.1)
Length = 438
Score = 27.5 bits (58), Expect = 4.5
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +2
Query: 134 PATVAEQTQDNKLVLHPQIYETIRGGSSAAKYSALLTLLCSL 259
P +Q +DN+ V+HP +Y I GG LLTLL L
Sbjct: 18 PPRRQQQEKDNRAVIHPYMYYVI-GGLGGI---VLLTLLVGL 55
>SB_40697| Best HMM Match : ABC_tran (HMM E-Value=7.1e-07)
Length = 659
Score = 27.5 bits (58), Expect = 4.5
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -3
Query: 162 SWVCSATVAGVPSWSPSLWFAIFKFFSK 79
SW VA + P LW A+F+ FSK
Sbjct: 55 SWAREKAVAKLRRTQPDLWKALFQTFSK 82
>SB_58944| Best HMM Match : fn3 (HMM E-Value=0.88)
Length = 697
Score = 27.5 bits (58), Expect = 4.5
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +1
Query: 67 GRIEFTEELEDRKPEAGRPRRYTGHGRRANP 159
GR + E + D P GRP Y G G+RA P
Sbjct: 541 GRNDLGESI-DSPPADGRPVPYVGVGQRATP 570
>SB_34187| Best HMM Match : ABC_tran (HMM E-Value=1.49995e-41)
Length = 1515
Score = 27.1 bits (57), Expect = 6.0
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -3
Query: 162 SWVCSATVAGVPSWSPSLWFAIFKFFSK 79
+W +AG S P LW A+ + FSK
Sbjct: 164 NWSVELQIAGEESRRPRLWRALLQMFSK 191
>SB_49264| Best HMM Match : Ank (HMM E-Value=3.7e-22)
Length = 775
Score = 26.6 bits (56), Expect = 7.9
Identities = 17/47 (36%), Positives = 20/47 (42%)
Frame = -3
Query: 345 HKFNAKLLFFSRTFLVKTPKYLF*NLCGYNEQSSVKSALYLAALLPP 205
H KLL + T Y + Y S KS LYL+AL PP
Sbjct: 325 HIMMNKLLLKASTIRQAVKAYSWLQKLLYLHPPSTKSCLYLSALTPP 371
>SB_26677| Best HMM Match : AT_hook (HMM E-Value=3.1)
Length = 355
Score = 26.6 bits (56), Expect = 7.9
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 82 TEELEDRKPEAGRPRRYTGHGRRANPGQQASAA 180
T + ED+ +AGRPR+ +G + + P Q A
Sbjct: 1 TSKPEDQDKQAGRPRQASGKTKTSKPLDQDKQA 33
>SB_46755| Best HMM Match : zf-C2H2 (HMM E-Value=1.09301e-43)
Length = 1806
Score = 26.6 bits (56), Expect = 7.9
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +2
Query: 182 PQIYETIRGGSSAAKYSALLTLL 250
P+IY TI GSS+ YS L T L
Sbjct: 1653 PRIYSTITQGSSSVGYSPLNTRL 1675
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,456,945
Number of Sequences: 59808
Number of extensions: 201764
Number of successful extensions: 557
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 752487277
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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