Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30189
(410 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC047775-1|AAH47775.1| 260|Homo sapiens chromosome 11 open read... 30 3.4
AK127789-1|BAC87137.1| 152|Homo sapiens protein ( Homo sapiens ... 30 3.4
AK096287-1|BAC04747.1| 260|Homo sapiens protein ( Homo sapiens ... 30 3.4
BC085017-1|AAH85017.1| 561|Homo sapiens LAMA5 protein protein. 29 6.0
AL354836-6|CAI12295.1| 500|Homo sapiens laminin, alpha 5 protein. 29 6.0
AL354836-5|CAC22310.1| 3690|Homo sapiens laminin, alpha 5 protein. 29 6.0
AF443072-1|AAM12527.1| 3695|Homo sapiens laminin alpha5 chain pr... 29 6.0
AB067494-1|BAB67800.1| 1737|Homo sapiens KIAA1907 protein protein. 29 6.0
BC036743-1|AAH36743.1| 655|Homo sapiens ubiquilin 3 protein. 29 7.9
AF230481-1|AAF67143.1| 655|Homo sapiens ubiquilin 3 protein. 29 7.9
AF137396-1|AAG41675.1| 670|Homo sapiens ubiquilin 3 protein. 29 7.9
>BC047775-1|AAH47775.1| 260|Homo sapiens chromosome 11 open reading
frame 46 protein.
Length = 260
Score = 29.9 bits (64), Expect = 3.4
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +1
Query: 82 TEELEDRKPEA-GRPRRYTGHGRRANPGQQASAAPPNIRNDTRR 210
TE+ + RKPE+ GR + + NPG+Q AP + + RR
Sbjct: 131 TEDRQKRKPESDGRTAKALRSLQFTNPGRQTEFAPETGKREKRR 174
>AK127789-1|BAC87137.1| 152|Homo sapiens protein ( Homo sapiens
cDNA FLJ45890 fis, clone OCBBF3022576. ).
Length = 152
Score = 29.9 bits (64), Expect = 3.4
Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -3
Query: 198 VSYIWGCSTSLLSW-VCSATVAGVPSWSPSLWFAIFKF 88
V ++ C + + W +CS + G+ S+ P LW ++F +
Sbjct: 31 VVFLLSCKSGYIVWNMCSLSDIGLISFCPILWLSLFSY 68
>AK096287-1|BAC04747.1| 260|Homo sapiens protein ( Homo sapiens
cDNA FLJ38968 fis, clone NT2RI2002316. ).
Length = 260
Score = 29.9 bits (64), Expect = 3.4
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +1
Query: 82 TEELEDRKPEA-GRPRRYTGHGRRANPGQQASAAPPNIRNDTRR 210
TE+ + RKPE+ GR + + NPG+Q AP + + RR
Sbjct: 131 TEDRQKRKPESDGRTAKALRSLQFTNPGRQTEFAPETGKREKRR 174
>BC085017-1|AAH85017.1| 561|Homo sapiens LAMA5 protein protein.
Length = 561
Score = 29.1 bits (62), Expect = 6.0
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -1
Query: 185 GGAALACCPGFARRPW 138
GG CCPGF ++PW
Sbjct: 330 GGTCDRCCPGFNQQPW 345
>AL354836-6|CAI12295.1| 500|Homo sapiens laminin, alpha 5 protein.
Length = 500
Score = 29.1 bits (62), Expect = 6.0
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -1
Query: 185 GGAALACCPGFARRPW 138
GG CCPGF ++PW
Sbjct: 330 GGTCDRCCPGFNQQPW 345
>AL354836-5|CAC22310.1| 3690|Homo sapiens laminin, alpha 5 protein.
Length = 3690
Score = 29.1 bits (62), Expect = 6.0
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -1
Query: 185 GGAALACCPGFARRPW 138
GG CCPGF ++PW
Sbjct: 330 GGTCDRCCPGFNQQPW 345
>AF443072-1|AAM12527.1| 3695|Homo sapiens laminin alpha5 chain
precursor protein.
Length = 3695
Score = 29.1 bits (62), Expect = 6.0
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -1
Query: 185 GGAALACCPGFARRPW 138
GG CCPGF ++PW
Sbjct: 330 GGTCDRCCPGFNQQPW 345
>AB067494-1|BAB67800.1| 1737|Homo sapiens KIAA1907 protein protein.
Length = 1737
Score = 29.1 bits (62), Expect = 6.0
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -1
Query: 185 GGAALACCPGFARRPW 138
GG CCPGF ++PW
Sbjct: 133 GGTCDRCCPGFNQQPW 148
>BC036743-1|AAH36743.1| 655|Homo sapiens ubiquilin 3 protein.
Length = 655
Score = 28.7 bits (61), Expect = 7.9
Identities = 18/57 (31%), Positives = 21/57 (36%), Gaps = 3/57 (5%)
Frame = -1
Query: 206 RVSFRIFGGAALACCPGFARRPW---PVYRRGLPAXXXXXXXXXXXSIRPQLP*IRH 45
RV F + A PG PW P Y R L I+PQLP + H
Sbjct: 454 RVPFAPLSFSPTAAIPGIPEPPWLPSPAYPRSLRPDGMNPAPQLQDEIQPQLPLLMH 510
>AF230481-1|AAF67143.1| 655|Homo sapiens ubiquilin 3 protein.
Length = 655
Score = 28.7 bits (61), Expect = 7.9
Identities = 18/57 (31%), Positives = 21/57 (36%), Gaps = 3/57 (5%)
Frame = -1
Query: 206 RVSFRIFGGAALACCPGFARRPW---PVYRRGLPAXXXXXXXXXXXSIRPQLP*IRH 45
RV F + A PG PW P Y R L I+PQLP + H
Sbjct: 454 RVPFAPLSFSPTAAIPGIPEPPWLPSPAYPRSLRPDGMNPAPQLQDEIQPQLPLLMH 510
>AF137396-1|AAG41675.1| 670|Homo sapiens ubiquilin 3 protein.
Length = 670
Score = 28.7 bits (61), Expect = 7.9
Identities = 18/57 (31%), Positives = 21/57 (36%), Gaps = 3/57 (5%)
Frame = -1
Query: 206 RVSFRIFGGAALACCPGFARRPW---PVYRRGLPAXXXXXXXXXXXSIRPQLP*IRH 45
RV F + A PG PW P Y R L I+PQLP + H
Sbjct: 469 RVPFAPLSFSPTAAIPGIPEPPWLPSPAYPRSLRPDGMNPAPQLQDEIQPQLPLLMH 525
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,182,555
Number of Sequences: 237096
Number of extensions: 933774
Number of successful extensions: 2655
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2655
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3030544982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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