Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30189
         (410 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88166-3|AAO44910.1|  160|Caenorhabditis elegans Collagen protei...    29   1.7  
Z81486-4|CAB03986.2|  430|Caenorhabditis elegans Hypothetical pr...    28   2.3  
AC024090-1|AAF35424.2|  591|Caenorhabditis elegans Hypothetical ...    28   3.0  
Z69883-3|CAA93741.2|  450|Caenorhabditis elegans Hypothetical pr...    27   4.0  
Z95623-3|CAB09135.1|  327|Caenorhabditis elegans Hypothetical pr...    27   5.3  
Z49913-7|CAA90149.1|  327|Caenorhabditis elegans Hypothetical pr...    27   5.3  
Z70208-1|CAA94141.1|  339|Caenorhabditis elegans Hypothetical pr...    26   9.2  
L16685-8|AAO12393.1|  285|Caenorhabditis elegans Hypothetical pr...    26   9.2  

>U88166-3|AAO44910.1|  160|Caenorhabditis elegans Collagen protein
           53 protein.
          Length = 160

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 6/40 (15%)
 Frame = +1

Query: 100 RKPEAGRPRRYTGHG------RRANPGQQASAAPPNIRND 201
           R+   GRP R  G G      +R   GQQ  +APP+IR +
Sbjct: 5   RECPTGRPGREGGDGPKGSKGQRGRTGQQGDSAPPSIRGE 44


>Z81486-4|CAB03986.2|  430|Caenorhabditis elegans Hypothetical
           protein C53A5.5 protein.
          Length = 430

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
 Frame = -3

Query: 243 VKSALYLAALLPPRIVSYIWGCSTSLLSWVCSA----TVAGVPSWSPSLWFAIFKFFS 82
           +KS +Y   L    I S ++ C  S +   C      +++G   ++  LWF I  FFS
Sbjct: 197 LKSEMYERPLFVLSIASLMFWCVVSWMLTQCERYAYPSISGFQHFADYLWFEIITFFS 254


>AC024090-1|AAF35424.2|  591|Caenorhabditis elegans Hypothetical
           protein C52E2.5 protein.
          Length = 591

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +2

Query: 17  TTFIKVDYANGESREAEDVLNLLKNLKIANQRL 115
           T+F+K+D+    +  ++D++ LLKN K A + L
Sbjct: 391 TSFLKIDHKADINNLSDDLVQLLKNQKTALKEL 423


>Z69883-3|CAA93741.2|  450|Caenorhabditis elegans Hypothetical
           protein C27C12.4 protein.
          Length = 450

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -3

Query: 246 SVKSALYLAALLP-PRIVSYIWGCSTSLLSWVCSATVAGVPSWSPSLWFAIFKFF 85
           S  ++ YLA  L    I+S++ G S +        T+  V    P   FAIFKFF
Sbjct: 341 STDASTYLAPTLNLTLIISFLLGVSDAFWQTQIYVTIGQVFKEDPVNAFAIFKFF 395


>Z95623-3|CAB09135.1|  327|Caenorhabditis elegans Hypothetical
           protein ZK938.1 protein.
          Length = 327

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -3

Query: 273 NLCGYNEQSSVKSALYLAALLPPRIVSYIWGCSTSLLSWVCSATV 139
           +L  YNE  ++ ++L L A++  RI     G S  L+SW   A +
Sbjct: 141 SLALYNEFQNLFNSLPLCAMISGRIFCMHGGLSPELVSWTQLAKI 185


>Z49913-7|CAA90149.1|  327|Caenorhabditis elegans Hypothetical
           protein ZK938.1 protein.
          Length = 327

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -3

Query: 273 NLCGYNEQSSVKSALYLAALLPPRIVSYIWGCSTSLLSWVCSATV 139
           +L  YNE  ++ ++L L A++  RI     G S  L+SW   A +
Sbjct: 141 SLALYNEFQNLFNSLPLCAMISGRIFCMHGGLSPELVSWTQLAKI 185


>Z70208-1|CAA94141.1|  339|Caenorhabditis elegans Hypothetical
           protein F54B11.1 protein.
          Length = 339

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 115 GRPRRYTGHGRRANPGQQASAAPPNIRNDTRR 210
           GRP R  GHG    PG  AS   P  ++  ++
Sbjct: 156 GRPGRPGGHGMPGMPGLGASPCQPRTQSQCQQ 187


>L16685-8|AAO12393.1|  285|Caenorhabditis elegans Hypothetical
           protein ZC21.6a protein.
          Length = 285

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 6/21 (28%), Positives = 13/21 (61%)
 Frame = -3

Query: 201 IVSYIWGCSTSLLSWVCSATV 139
           +V Y+W  + +L+ W+C   +
Sbjct: 216 VVLYMWNTAAALIGWICRMVI 236


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,845,152
Number of Sequences: 27780
Number of extensions: 151303
Number of successful extensions: 518
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)