Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30189
         (410 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g76630.1 68414.m08916 tetratricopeptide repeat (TPR)-containi...    27   3.7  
At1g76280.1 68414.m08858 pentatricopeptide (PPR) repeat-containi...    27   3.7  
At3g03060.1 68416.m00302 AAA-type ATPase family protein contains...    27   4.9  
At2g43470.1 68415.m05402 expressed protein                             27   4.9  
At5g01460.1 68418.m00059 LMBR1 integral membrane family protein ...    27   6.5  
At3g08930.2 68416.m01039 LMBR1 integral membrane family protein ...    27   6.5  
At3g08930.1 68416.m01040 LMBR1 integral membrane family protein ...    27   6.5  
At2g03350.1 68415.m00294 expressed protein contains Pfam profile...    27   6.5  
At1g13970.1 68414.m01645 expressed protein                             27   6.5  
At5g17720.1 68418.m02077 hydrolase, alpha/beta fold family prote...    26   8.6  
At3g17400.1 68416.m02223 F-box family protein contains Pfam prof...    26   8.6  

>At1g76630.1 68414.m08916 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile: PF00515 TPR Domain (5
           copies)
          Length = 1064

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -3

Query: 222 AALLPPRIVSYIWGCSTSLLSWVCSATVAGVPSWSPSL 109
           A  + P+ +S ++G ++ LLSW       G   W+ SL
Sbjct: 218 ALKISPQNISVLYGLASGLLSWSKECINLGAFGWAASL 255


>At1g76280.1 68414.m08858 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 773

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +2

Query: 20  TFIKVDYANGESREAEDVLNLLKNLKIANQR-LGDHDGTPATVA 148
           +F  V +A G+S+ +E    L+  LK+  Q+ L  +D T ATVA
Sbjct: 335 SFNDVIHACGQSKNSELAEQLMLQLKVMQQQNLKPYDSTLATVA 378


>At3g03060.1 68416.m00302 AAA-type ATPase family protein contains a
           ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017
          Length = 639

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 112 AGRPRRYTGHGRRANPGQQASAAPPNIRND 201
           A  P   +G    ANP QQAS  PP++  +
Sbjct: 27  ADGPFNLSGFSTSANPQQQASPPPPSLAGE 56


>At2g43470.1 68415.m05402 expressed protein
          Length = 498

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 89  NLKIANQRLGDHDGTPATVAEQTQDNKLVLHPQIYE 196
           N KIA ++  DH+G   T  +  +   +VL  Q+Y+
Sbjct: 80  NKKIAKKKKEDHNGLGTTRVDNEEIVNMVLASQVYQ 115


>At5g01460.1 68418.m00059 LMBR1 integral membrane family protein
           contains Pfam PF04791: LMBR1-like conserved region
          Length = 509

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 5/32 (15%)
 Frame = -1

Query: 203 VSFRIFGGAALACCP-----GFARRPWPVYRR 123
           V F IFGG  +AC P      F RRP  V  R
Sbjct: 218 VLFTIFGGVGIACLPLGLITAFIRRPKAVITR 249


>At3g08930.2 68416.m01039 LMBR1 integral membrane family protein
           contains 5 transmembrane domains; contains Pfam PF04791:
           LMBR1-like conserved region; similar to unknown protein
           GB:BAA83351 [Oryza sativa]
          Length = 526

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 5/32 (15%)
 Frame = -1

Query: 203 VSFRIFGGAALACCP-----GFARRPWPVYRR 123
           V F IFGG  +AC P      F RRP  V  R
Sbjct: 235 VLFTIFGGVGIACLPLGLITAFIRRPKAVITR 266


>At3g08930.1 68416.m01040 LMBR1 integral membrane family protein
           contains 5 transmembrane domains; contains Pfam PF04791:
           LMBR1-like conserved region; similar to unknown protein
           GB:BAA83351 [Oryza sativa]
          Length = 310

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 5/32 (15%)
 Frame = -1

Query: 203 VSFRIFGGAALACCP-----GFARRPWPVYRR 123
           V F IFGG  +AC P      F RRP  V  R
Sbjct: 19  VLFTIFGGVGIACLPLGLITAFIRRPKAVITR 50


>At2g03350.1 68415.m00294 expressed protein contains Pfam profile
           PF04398: Protein of unknown function, DUF538
          Length = 179

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = -3

Query: 261 YNEQSSVKSALYLAALLPPRIVSYIWGCSTSLLSWVCSATVAGVPSWSPSLWF 103
           + + S+++ A  +  +L    +  + G  T +L WV   T++   S S  LWF
Sbjct: 101 FKDGSAIRYATRVKGILLRGKLMGVEGMKTKVLVWVKVTTISVESSKSDKLWF 153


>At1g13970.1 68414.m01645 expressed protein
          Length = 504

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 16/75 (21%), Positives = 39/75 (52%)
 Frame = +2

Query: 2   YEVALTTFIKVDYANGESREAEDVLNLLKNLKIANQRLGDHDGTPATVAEQTQDNKLVLH 181
           YE    +++K+D   GE+  +++ +++ +N ++A++    H+    T  E  QD++    
Sbjct: 138 YEEFYESYLKIDGNKGETYSSKNEVSIKRN-QVADE--SHHETFKTTTCEDHQDHRKKSS 194

Query: 182 PQIYETIRGGSSAAK 226
             +  ++R  S  +K
Sbjct: 195 KVVMVSVRRTSIDSK 209


>At5g17720.1 68418.m02077 hydrolase, alpha/beta fold family protein
           low similarity to SP|P27747 Dihydrolipoamide
           acetyltransferase component of acetoin cleaving system
           (EC 2.3.1.12) [Ralstonia eutropha] {Alcaligenes
           eutrophus}, SP|P24640 Lipase 3 precursor (EC 3.1.1.3)
           (Triacylglycerol lipase) {Moraxella sp}; contains Pfam
           profile PF00561: hydrolase, alpha/beta fold family
          Length = 443

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 174 TSLLSWVCSATVAGVPSWSPSLWFAIFKFF 85
           TS  S  C++ + G PSW+    F +  +F
Sbjct: 3   TSSFSEKCTSVINGAPSWAVFFLFDLLDYF 32


>At3g17400.1 68416.m02223 F-box family protein contains Pfam
           profile: PF00646 F-box domain
          Length = 185

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = -3

Query: 198 VSYIWGCSTSLLSWV--CSATVAGVPSWSPSLWF 103
           +SY++ C + +L     C+  V   P W  +LWF
Sbjct: 101 ISYVYHCDSLVLCIPKDCARLVVWNPYWGQTLWF 134


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,279,767
Number of Sequences: 28952
Number of extensions: 134900
Number of successful extensions: 395
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 615542944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)