Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30187
         (601 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein L20|Sc...    97   1e-21
SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosom...    97   1e-21
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    28   0.91 
SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa...    26   3.7  
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo...    26   3.7  
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac...    26   4.8  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    26   4.8  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    26   4.8  
SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo...    25   6.4  
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ...    25   6.4  
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    25   6.4  
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    25   8.5  
SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|c...    25   8.5  
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce...    25   8.5  

>SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein
           L20|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 97.5 bits (232), Expect = 1e-21
 Identities = 41/80 (51%), Positives = 57/80 (71%)
 Frame = +2

Query: 14  LREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXXX 193
           L+EY+V+GRK+P+E+EP P L++MR+F+P+  VAKSR+WYFL+ + K KK TGEIV    
Sbjct: 3   LKEYQVVGRKVPTEHEPVPKLFRMRLFAPNESVAKSRYWYFLKMINKVKKATGEIVAINE 62

Query: 194 XXXXXXXXXXNFGIWLRYES 253
                      FGIW+RY+S
Sbjct: 63  ISEPKPLKAKVFGIWIRYDS 82



 Score = 76.6 bits (180), Expect = 3e-15
 Identities = 40/71 (56%), Positives = 47/71 (66%), Gaps = 1/71 (1%)
 Frame = +1

Query: 256 SGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIK-VEVIKAAACRRPQVKQFH 432
           SG HNMY+E+RD +  GAV   Y DM ARHRAR  SI+I+K VEV K    RR  VKQ  
Sbjct: 84  SGTHNMYKEFRDTTRVGAVEAMYADMAARHRARFRSIRILKVVEVEKKEDVRRNYVKQLL 143

Query: 433 NSTIRFPLPKR 465
           N  ++FPLP R
Sbjct: 144 NPHLKFPLPHR 154


>SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosomal
           protein L20a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 97.5 bits (232), Expect = 1e-21
 Identities = 41/80 (51%), Positives = 57/80 (71%)
 Frame = +2

Query: 14  LREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXXX 193
           L+EY+V+GRK+P+E+EP P L++MR+F+P+  VAKSR+WYFL+ + K KK TGEIV    
Sbjct: 3   LKEYQVVGRKVPTEHEPVPKLFRMRLFAPNESVAKSRYWYFLKMINKVKKATGEIVAINE 62

Query: 194 XXXXXXXXXXNFGIWLRYES 253
                      FGIW+RY+S
Sbjct: 63  ISEPKPLKAKVFGIWIRYDS 82



 Score = 76.6 bits (180), Expect = 3e-15
 Identities = 40/71 (56%), Positives = 47/71 (66%), Gaps = 1/71 (1%)
 Frame = +1

Query: 256 SGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIK-VEVIKAAACRRPQVKQFH 432
           SG HNMY+E+RD +  GAV   Y DM ARHRAR  SI+I+K VEV K    RR  VKQ  
Sbjct: 84  SGTHNMYKEFRDTTRVGAVEAMYADMAARHRARFRSIRILKVVEVEKKEDVRRNYVKQLL 143

Query: 433 NSTIRFPLPKR 465
           N  ++FPLP R
Sbjct: 144 NPHLKFPLPHR 154


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 28.3 bits (60), Expect = 0.91
 Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
 Frame = +3

Query: 21  NMRLSAVSSRRRTSPSLPCIK*EFSLRIQLSPNLVSGIS*DNLRSSRRPLVKLSLLRKFQ 200
           N+ + +V    R S     I    S ++   P++V   S D+ + SRRP +  S  RKF 
Sbjct: 271 NITVESVRGFLRDSSKPDNIMDSPSPKVSKRPSIVRQDSHDSNKLSRRPTINTSFDRKFS 330

Query: 201 RK---APSRLRILVSGYAMSL 254
            K    PS  + L  G   SL
Sbjct: 331 PKLTRTPSLTKSLDPGTPTSL 351


>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
           L19B|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 193

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +3

Query: 99  RIQLSPNLVSGIS*DNLRSSRRPLVKLSLLRKFQRKAPSRLRI 227
           ++ + PN +S IS  N R + R LVK  L+ +      SR RI
Sbjct: 21  KVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLMHSRFRI 63


>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
           Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -1

Query: 124 TRFGDNWIRRENSHFIQGRLGLVLRRELTADN 29
           ++F DN++  ++      R+G+ L REL  D+
Sbjct: 3   SQFNDNFVATDDDVGTMARVGMALDRELNGDS 34


>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
           L19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 193

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +3

Query: 99  RIQLSPNLVSGIS*DNLRSSRRPLVKLSLLRKFQRKAPSRLRI 227
           ++ + PN +S IS  N R + R L+K  L+ +      SR RI
Sbjct: 21  KVWMDPNEISEISNANSRQNVRKLIKDGLVIRKPNLMHSRFRI 63


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +2

Query: 17  REYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWY 133
           +E  V+   +  E     P   +R +SP+ ++  S FWY
Sbjct: 470 QEILVLKSSIEKEKVEIVPFLDIRKYSPNEVLCMSPFWY 508


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +3

Query: 312 HSVL*RYGS*TQSPSSLNTDYQSGSNQGCCVSPSTGQTVPQQH 440
           HS   R G+ T +  +L +   + SN G   +  TG T+P  H
Sbjct: 99  HSASPRQGNNTGANGALFSQSTNSSNSGSYRNSVTGATLPNAH 141


>SPBC8D2.05c |sfi1||spindle pole body protein
           Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 840

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 101 DPIVAKSRFWYFLRQLKKFK 160
           D ++   RFWY+L + K F+
Sbjct: 476 DRLIVTFRFWYYLMKAKSFQ 495


>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 409

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -2

Query: 453 WESDGAVVELFDLWTATRSSLDY 385
           WE  G  V+ +  W A   S DY
Sbjct: 145 WEKLGVTVDTYPYWDAKNRSFDY 167


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +3

Query: 333 GS*TQSPSSLNTDYQSGSNQGCCVSPSTGQTVPQQHHQIPIAQTCAPLQET 485
           G+ +QSP+S +      SNQ   +SPST  +    HH    +   +P   T
Sbjct: 93  GNSSQSPTSPHP-----SNQPAMLSPSTAASQHHHHHSSSSSYAVSPTSPT 138


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1441

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 172  TSGLLELLKLSQEIPETRFGDNWIRRENSH 83
            TSG L LL    E PE+  G+  + R + H
Sbjct: 1274 TSGNLRLLAYDPENPESHSGERLVTRGDFH 1303


>SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 559

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = +2

Query: 68  PPLYKMRIFSPDPIVAKSRFWYFL 139
           PP     +  P  +  K +FWY++
Sbjct: 534 PPKSNAELVDPSTLSGKDKFWYYI 557


>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +1

Query: 214 QD*EFWYLATL*VSSGVH-NMYREYRD 291
           +D ++WYL    +S G H N+ R Y D
Sbjct: 309 RDDQYWYLVRAVMSDGKHRNLCRYYED 335


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,460,440
Number of Sequences: 5004
Number of extensions: 49616
Number of successful extensions: 124
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)