Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30187
         (601 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19131| Best HMM Match : No HMM Matches (HMM E-Value=.)              99   1e-21
SB_26178| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_56589| Best HMM Match : zf-C4_Topoisom (HMM E-Value=1.1)            28   5.0  
SB_54838| Best HMM Match : Vitellogenin_N (HMM E-Value=4.76441e-44)    28   5.0  
SB_49314| Best HMM Match : 7tm_1 (HMM E-Value=5.4e-30)                 28   6.6  
SB_28821| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  

>SB_19131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 456

 Score =   99 bits (238), Expect = 1e-21
 Identities = 45/59 (76%), Positives = 49/59 (83%)
 Frame = +1

Query: 256 SGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFH 432
           SG HNMYREYRDL+V GAVT CYRDM ARHRAR +SIQI+KVEVI A+  RRP VKQ H
Sbjct: 288 SGTHNMYREYRDLTVSGAVTACYRDMAARHRARGYSIQIMKVEVIPASKARRPHVKQMH 346



 Score = 99.5 bits (237), Expect = 2e-21
 Identities = 43/80 (53%), Positives = 57/80 (71%)
 Frame = +2

Query: 14  LREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXXX 193
           L+E++VIGR +P++    PPLYKMRIF+PD +VA+S+FWYF+ QLK+ KK+ GEIV    
Sbjct: 207 LKEFQVIGRLMPNKKLTVPPLYKMRIFAPDDVVARSKFWYFISQLKRMKKSQGEIVSCQQ 266

Query: 194 XXXXXXXXXXNFGIWLRYES 253
                     NFGIWLRY+S
Sbjct: 267 IYEKKPLQIKNFGIWLRYDS 286


>SB_26178| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 897

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/24 (50%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
 Frame = +2

Query: 23  YEVIGRKLP-SENEPKPPLYKMRI 91
           YEV+G+ +  S N+PK PL K+R+
Sbjct: 285 YEVLGKSVNNSRNQPKDPLKKLRV 308


>SB_56589| Best HMM Match : zf-C4_Topoisom (HMM E-Value=1.1)
          Length = 743

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 430 HNSTIRFPLPKRVHHYKRLNTFAYKRLALTSCNCNVRH 543
           HNS +R  +  ++H+    +TF   RLA  + +C   H
Sbjct: 705 HNSRLRLAMSPKLHNPPIDDTFGVNRLAAATTSCIALH 742


>SB_54838| Best HMM Match : Vitellogenin_N (HMM E-Value=4.76441e-44)
          Length = 2581

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
 Frame = +2

Query: 11   QLREYEVIGRKLPSENEPKPPLYKMRIFSPD-----PIVAKSRFWYFLRQLKKFKKTTGE 175
            +LR Y++I ++LP+E+E K   +  +I +P+       VA +  W  L + K F  +TG 
Sbjct: 1424 KLRLYQIISQRLPTEDENKYD-FVTKISTPNATWEREFVANASLW-LLDEEKSFSISTGA 1481

Query: 176  I 178
            +
Sbjct: 1482 L 1482


>SB_49314| Best HMM Match : 7tm_1 (HMM E-Value=5.4e-30)
          Length = 300

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +1

Query: 361 SIQIIKVEVIKAAACRRPQVKQFHNSTIRFPLPKRVHHYKRLNT 492
           S++I    ++   AC  P V   HN  +R  + + VHH KR+ T
Sbjct: 246 SLEITCFFLLHVNACCNPVVYSLHNPKLRKCMNRLVHH-KRVRT 288


>SB_28821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 71

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +1

Query: 409 RPQVKQFHNSTIRFPLPKRVHHYKRLNTFAYKRLALTSCNCNV 537
           RP VK FH  T++F +     H KR N+  + ++  +  N  +
Sbjct: 19  RPTVK-FHQKTVKFHILSVEFHQKRSNSTTFGQIPSSRSNSTI 60


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,611,218
Number of Sequences: 59808
Number of extensions: 383938
Number of successful extensions: 1240
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1236
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)