Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30187
(601 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF038611-9|AAB92041.2| 180|Caenorhabditis elegans Ribosomal pro... 109 1e-24
Z81070-7|CAD30437.1| 608|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z81070-6|CAB03000.1| 677|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical pr... 29 3.3
AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein. 29 3.3
AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical ... 25 4.0
AC024211-6|AAF36067.2| 1454|Caenorhabditis elegans Hypothetical ... 28 5.9
>AF038611-9|AAB92041.2| 180|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 20 protein.
Length = 180
Score = 109 bits (263), Expect = 1e-24
Identities = 50/84 (59%), Positives = 61/84 (72%)
Frame = +1
Query: 256 SGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHN 435
+G HNMYREYRD +V GAVTQCYRDMGARHRA+A I I+KV+ +KA +R +K FH+
Sbjct: 91 TGHHNMYREYRDTTVAGAVTQCYRDMGARHRAQADRIHILKVQTVKAEDTKRAGIKMFHD 150
Query: 436 STIRFPLPKRVHHYKRLNTFAYKR 507
+ IRFPLP RV K L+ F R
Sbjct: 151 AKIRFPLPHRVTKRKNLSVFTTAR 174
Score = 89.8 bits (213), Expect = 1e-18
Identities = 36/80 (45%), Positives = 54/80 (67%)
Frame = +2
Query: 14 LREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXXX 193
L EY V+GRK+P+E EP P++KM+IF+ + ++AKSRFWYF+ L++ KK GEI+
Sbjct: 10 LNEYVVVGRKIPTEKEPVTPIWKMQIFATNHVIAKSRFWYFVSMLRRVKKANGEILSIKQ 69
Query: 194 XXXXXXXXXXNFGIWLRYES 253
N+G+WL+Y+S
Sbjct: 70 VFEKNPGTVKNYGVWLKYDS 89
>Z81070-7|CAD30437.1| 608|Caenorhabditis elegans Hypothetical
protein F26E4.7b protein.
Length = 608
Score = 28.7 bits (61), Expect = 3.3
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = -3
Query: 116 WRQLDPERKFSFY--TREAWARSPTGAYGR 33
W+ L PE+ F+F+ T EAW + T R
Sbjct: 451 WQVLTPEQNFTFFVPTNEAWHKQSTSLVAR 480
>Z81070-6|CAB03000.1| 677|Caenorhabditis elegans Hypothetical
protein F26E4.7a protein.
Length = 677
Score = 28.7 bits (61), Expect = 3.3
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = -3
Query: 116 WRQLDPERKFSFY--TREAWARSPTGAYGR 33
W+ L PE+ F+F+ T EAW + T R
Sbjct: 520 WQVLTPEQNFTFFVPTNEAWHKQSTSLVAR 549
>Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical
protein C02B4.1 protein.
Length = 1461
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = +1
Query: 454 LPKRVHHYKRLNTFAYKRLA--LTSCNCNVR 540
LPKRVHH ++ YKR A LT+ +R
Sbjct: 148 LPKRVHHLQKERHLVYKRSAGLLTNAESKIR 178
>Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical
protein C02B4.1 protein.
Length = 1461
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = +1
Query: 454 LPKRVHHYKRLNTFAYKRLA--LTSCNCNVR 540
LPKRVHH ++ YKR A LT+ +R
Sbjct: 148 LPKRVHHLQKERHLVYKRSAGLLTNAESKIR 178
>AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein.
Length = 1461
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = +1
Query: 454 LPKRVHHYKRLNTFAYKRLA--LTSCNCNVR 540
LPKRVHH ++ YKR A LT+ +R
Sbjct: 148 LPKRVHHLQKERHLVYKRSAGLLTNAESKIR 178
>AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical
protein W03G1.5 protein.
Length = 471
Score = 25.4 bits (53), Expect(2) = 4.0
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -1
Query: 298 HSGHGIHGTCCVHPK 254
H GHG HG+C P+
Sbjct: 285 HGGHGRHGSCSGSPR 299
Score = 21.4 bits (43), Expect(2) = 4.0
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = -1
Query: 304 HLHSGHGIHGT 272
H H GHG HG+
Sbjct: 253 HGHGGHGGHGS 263
>AC024211-6|AAF36067.2| 1454|Caenorhabditis elegans Hypothetical
protein Y76B12C.7 protein.
Length = 1454
Score = 27.9 bits (59), Expect = 5.9
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Frame = -1
Query: 295 SGHGIHGTCCVHPKRLIA*PDTKILNLDGA-FLWNFLNRDNFTSGLLELLKLSQEIPETR 119
SGHG +G CVH + L T L L+GA LW ++N + L + ++ +
Sbjct: 483 SGHGKNGALCVHQRSLRPEIITSSL-LEGAEQLWAVGRKENESHKYLIVSRVRSTL-ILE 540
Query: 118 FGDNWIRRENSHFIQG 71
G+ + E F+ G
Sbjct: 541 LGEELVELEEQLFVTG 556
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,693,373
Number of Sequences: 27780
Number of extensions: 287418
Number of successful extensions: 754
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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