Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30187
         (601 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g29965.1 68414.m03664 60S ribosomal protein L18A  (RPL18aA) JRW     87   1e-17
At3g14600.1 68416.m01849 60S ribosomal protein L18A (RPL18aC) si...    86   1e-17
At2g34480.1 68415.m04233 60S ribosomal protein L18A (RPL18aB)          86   1e-17
At2g35200.1 68415.m04317 expressed protein                             30   1.0  
At3g57460.1 68416.m06397 expressed protein weak similarity to SP...    29   2.4  
At1g30720.1 68414.m03755 FAD-binding domain-containing protein s...    29   2.4  
At1g51550.1 68414.m05802 F-box family protein similar to F-box Z...    28   4.1  
At1g26870.1 68414.m03277 no apical meristem (NAM) family protein...    28   4.1  

>At1g29965.1 68414.m03664 60S ribosomal protein L18A  (RPL18aA) JRW
          Length = 178

 Score = 86.6 bits (205), Expect = 1e-17
 Identities = 37/67 (55%), Positives = 47/67 (70%)
 Frame = +1

Query: 256 SGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHN 435
           +G HNMY+EYRD ++ GAV Q Y +M +RHR R   IQIIK   + A+ C+R   KQFHN
Sbjct: 87  TGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTATVPASLCKRESTKQFHN 146

Query: 436 STIRFPL 456
           S I+FPL
Sbjct: 147 SKIKFPL 153



 Score = 86.2 bits (204), Expect = 1e-17
 Identities = 33/81 (40%), Positives = 57/81 (70%)
 Frame = +2

Query: 11  QLREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXX 190
           +L +Y+V+GR LP+E + +P +Y+M++++ + ++AKS+FWY+LR+ KK KK+ G+++   
Sbjct: 5   RLHQYQVVGRALPTEKDEQPKIYRMKLWATNEVLAKSKFWYYLRRQKKVKKSNGQMLAIN 64

Query: 191 XXXXXXXXXXXNFGIWLRYES 253
                      NFGIWLRY+S
Sbjct: 65  EIFEKNPTTIKNFGIWLRYQS 85


>At3g14600.1 68416.m01849 60S ribosomal protein L18A (RPL18aC)
           similar to GB:CAA08791 from [Podocoryne carnea]
          Length = 178

 Score = 86.2 bits (204), Expect = 1e-17
 Identities = 33/81 (40%), Positives = 55/81 (67%)
 Frame = +2

Query: 11  QLREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXX 190
           +  +Y+V+GR LP+EN+  P +Y+M+++  + + AKS+FWYF+R+LKK KK+ G+++   
Sbjct: 5   RFHQYQVVGRALPTENDEHPKIYRMKLWGRNEVCAKSKFWYFMRKLKKVKKSNGQMLAIN 64

Query: 191 XXXXXXXXXXXNFGIWLRYES 253
                      N+GIWLRY+S
Sbjct: 65  EIFEKNPTTIKNYGIWLRYQS 85



 Score = 83.0 bits (196), Expect = 1e-16
 Identities = 36/67 (53%), Positives = 45/67 (67%)
 Frame = +1

Query: 256 SGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHN 435
           +G HNMY+EYRD ++ G V Q Y +M +RHR R   IQIIK   + A  C+R   KQFHN
Sbjct: 87  TGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRFPCIQIIKTATVPAKLCKREITKQFHN 146

Query: 436 STIRFPL 456
           S I+FPL
Sbjct: 147 SKIKFPL 153


>At2g34480.1 68415.m04233 60S ribosomal protein L18A (RPL18aB)
          Length = 178

 Score = 86.2 bits (204), Expect = 1e-17
 Identities = 34/81 (41%), Positives = 56/81 (69%)
 Frame = +2

Query: 11  QLREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXX 190
           +  +Y+V+GR LP+E + +P +Y+M++++ + + AKS+FWYFLR+LKK KK+ G+++   
Sbjct: 5   RFHQYQVVGRALPTEKDVQPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAIN 64

Query: 191 XXXXXXXXXXXNFGIWLRYES 253
                      NFGIWLRY+S
Sbjct: 65  EIYEKNPTTIKNFGIWLRYQS 85



 Score = 85.8 bits (203), Expect = 2e-17
 Identities = 37/67 (55%), Positives = 46/67 (68%)
 Frame = +1

Query: 256 SGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHN 435
           +G HNMY+EYRD ++ GAV Q Y +M +RHR R   IQIIK   + A  C+R   KQFHN
Sbjct: 87  TGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTATVPAKLCKRESTKQFHN 146

Query: 436 STIRFPL 456
           S I+FPL
Sbjct: 147 SKIKFPL 153


>At2g35200.1 68415.m04317 expressed protein
          Length = 201

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 89  IFSPDPIVAKSRFWYFLRQLKKFKKT 166
           +FSP P+ +K   WYF   +K F+++
Sbjct: 160 LFSPTPVTSKGNGWYFPSPIKVFRQS 185


>At3g57460.1 68416.m06397 expressed protein weak similarity to
           SP|O43847 Nardilysin precursor (EC 3.4.24.61)
           (N-arginine dibasic convertase) {Homo sapiens}
          Length = 356

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +1

Query: 418 VKQFHNSTIRFPLPKRVHHYK 480
           +KQ HN T+ +P+   +HHY+
Sbjct: 44  IKQGHNLTVSWPVTPSIHHYE 64


>At1g30720.1 68414.m03755 FAD-binding domain-containing protein
           similar to SP|P30986 reticuline oxidase precursor
           (Berberine-bridge-forming enzyme) (BBE)
           (Tetrahydroprotoberberine synthase) [Eschscholzia
           californica]; contains PF01565 FAD binding domain
          Length = 527

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 223 EFWYLATL*VSSGVHNMYREYRDLSVGGAVTQCYRD 330
           EF+   T  VSS     +  YRDL +G +V   Y++
Sbjct: 453 EFYRFMTPYVSSNPREAFLNYRDLDIGSSVKSTYQE 488


>At1g51550.1 68414.m05802 F-box family protein similar to F-box
           ZEITLUPE/FKF/LKP/ADAGIO proteins e.g. GI:13487068 from
           [Arabidopsis thaliana]
          Length = 478

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
 Frame = -1

Query: 286 GIHGTCCVHPKRLIA*PDTKILNLDGAFLWNFLNRDNFTSGLLELLKLSQEIPETRFGDN 107
           G H  CC+  K+++      +  +     W     ++F+SG   +++ S ++P  R G  
Sbjct: 235 GAHSACCIAEKKMVVHGGIGLNGVRLGDTWILELSEDFSSGTWHMVE-SPQLPPPRSGHT 293

Query: 106 -WIRRENSHFIQGRLGL 59
               REN   + G  GL
Sbjct: 294 LTCIRENQVVLFGGRGL 310


>At1g26870.1 68414.m03277 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
           similar to GB:AAD22369, NAM stands for No Apicla
           Meristem
          Length = 425

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 20/56 (35%), Positives = 27/56 (48%)
 Frame = +2

Query: 2   AKGQLREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTT 169
           AKG   ++ +   +LPS +EP PP    R F  D  V+ +  W   R  KK   TT
Sbjct: 136 AKGVKTDWMMHEFRLPSLSEPSPP--SKRFF--DSPVSPNDSWAICRIFKKTNTTT 187


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,998,339
Number of Sequences: 28952
Number of extensions: 270115
Number of successful extensions: 726
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)