Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30186
         (664 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0667 + 26071774-26072070,26072352-26073153,26073209-260734...    29   3.3  
03_01_0455 + 3487354-3488090,3489172-3489255,3489942-3490554,349...    28   5.8  
02_02_0712 + 13200174-13200761,13201966-13202616                       28   5.8  

>11_06_0667 +
           26071774-26072070,26072352-26073153,26073209-26073411,
           26075078-26075521,26075703-26075758,26076323-26076402,
           26077098-26077174,26077279-26078301
          Length = 993

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/44 (34%), Positives = 27/44 (61%)
 Frame = -1

Query: 316 ILRNEKLLRLSAIFAILQERH*SLKFGKNMITKHLLQIFEWVNS 185
           +L ++ ++RL     + +E H SL   KNM+ K LL +FE++ +
Sbjct: 733 LLHHKHIIRLVGCCVMEEEEHWSLFQKKNMVEKRLL-VFEYMEN 775


>03_01_0455 +
           3487354-3488090,3489172-3489255,3489942-3490554,
           3491356-3491583,3492270-3492437,3492828-3494587,
           3494667-3494670
          Length = 1197

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = +3

Query: 456 GSG*VPPPRLFQP*SSNAFGLRGGAAVVTILR-PLELISQDG-WRIYVGLQ*PRNT-RWA 626
           G G  PP R   P SS A      AA   + R P +  +Q    R YVG+Q  + T +WA
Sbjct: 31  GEGAPPPARTMPPPSSQAATSTPPAAATPLQRPPAQATAQPSTQRYYVGVQRDKGTGKWA 90


>02_02_0712 + 13200174-13200761,13201966-13202616
          Length = 412

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 7/41 (17%)
 Frame = -3

Query: 107 SESHIPLLD-------VLPTKKNIYLQFYSFHSVTFRTRYQ 6
           SESH+PL D       ++ +   IYL+ Y    VT R RY+
Sbjct: 229 SESHVPLFDFPTVYSYLINSTTKIYLESYDLPGVTGRGRYK 269


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,563,885
Number of Sequences: 37544
Number of extensions: 312241
Number of successful extensions: 625
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)