Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30186
         (664 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82284-2|CAB05290.1|  402|Caenorhabditis elegans Hypothetical pr...    30   1.7  
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    27   9.0  

>Z82284-2|CAB05290.1|  402|Caenorhabditis elegans Hypothetical
           protein T27E7.3 protein.
          Length = 402

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 285 LKRNSFSFLNIKATAGEHSKIQRFTNHLF 371
           LK+N   F+  K T G+ ++I +F +H+F
Sbjct: 40  LKKNCACFIGFKKTTGKSAQIVQFADHIF 68


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 8/68 (11%)
 Frame = +3

Query: 234  FPNFKL*WRSCKIAKMALKRN-SFSFLNIKATAG-------EHSKIQRFTNHLFAKLVVK 389
            +P   +    C+I  ++L     FSF   +   G       + SK    T H+FA + +K
Sbjct: 6970 YPTVSMFGAKCEIEHLSLNNAFDFSFTIDETPTGSLITVDFDKSKYLDTTVHMFANIFLK 7029

Query: 390  *INNLSNM 413
             +NNL NM
Sbjct: 7030 KLNNLRNM 7037


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,714,981
Number of Sequences: 27780
Number of extensions: 291583
Number of successful extensions: 540
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)