Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30184
         (565 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    30   0.27 
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    29   0.47 
SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3 sub...    29   0.62 
SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog |Schi...    27   1.4  
SPBC947.08c |||histone promoter control protein Hpc2 |Schizosacc...    26   4.4  
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    25   7.7  

>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 29.9 bits (64), Expect = 0.27
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = +2

Query: 323 HATNFLKEYLKQHANSPKDVQPSGEGKKGSKTIIIQGDSRKHLFEAYKEYGEILEPG 493
           H++  L+ + K H  + K+ +PS    K S  +    D    LF+ Y ++G +L  G
Sbjct: 258 HSSLDLRRFFKSHQKTDKEKKPSVSKSKSSANL---QDDHFGLFKKYGKFGRMLGSG 311


>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 29.1 bits (62), Expect = 0.47
 Identities = 10/47 (21%), Positives = 26/47 (55%)
 Frame = +3

Query: 15  YRHRLNIAELTKSEHDMYLMGITMASLANPAETSRHKVRRRLRACYV 155
           ++H   +++   SE  ++  GI +  +A+P     H++ + L +C++
Sbjct: 163 FQHEFTVSKYASSEESIWSAGIAIPEIAHPPSYD-HRLHQSLLSCFL 208


>SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 804

 Score = 28.7 bits (61), Expect = 0.62
 Identities = 22/72 (30%), Positives = 36/72 (50%)
 Frame = -2

Query: 510 IPINLTPGSKISPYSL*ASNKCFRESPWIIMVLLPFLPSPEG*TSLGEFACCFKYSLRKF 331
           +PI+L P ++I PY   + +K F        +++  LP   G T +G  A C   +++K 
Sbjct: 314 LPIDLKPSTQIRPYQEKSLSKMFGNGRARSGIIV--LPCGAGKTLVGITAAC---TIKKS 368

Query: 330 VACLYMSKVKVL 295
           V  L  S V V+
Sbjct: 369 VIVLCTSSVSVM 380


>SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -1

Query: 385 LNIFRRICMLLQIFLKEIRCMFV 317
           L IFR I ++LQIFL  I C+++
Sbjct: 145 LGIFRFIMLILQIFLPGIVCIYL 167


>SPBC947.08c |||histone promoter control protein Hpc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 338

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 305 TLDIYKHATNFLKEYLKQHANSPKDV 382
           TL I   A N LKE  +++A  PKDV
Sbjct: 183 TLSIEMAAKNALKEAKRENAKVPKDV 208


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = -2

Query: 324 CLYMSKVKVL*GFLPTFPCILGAN--HGSSHVAGYVLTDSVSHFQDIRMLP 178
           C     +K+   F+ TF C+  A+   G        L+ S+SH  DIR +P
Sbjct: 324 CKRRCNIKIWKTFINTFNCLPIASVVAGKIFCVHGGLSPSLSHMDDIREIP 374


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,406,988
Number of Sequences: 5004
Number of extensions: 50482
Number of successful extensions: 138
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)