Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30184
         (565 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0417 - 25052305-25052398,25052583-25052672,25052740-250529...    29   2.6  
09_03_0038 + 11790075-11790302,11790397-11790542,11790915-117910...    29   3.4  
08_01_0706 - 6235817-6235988,6236028-6236338,6236421-6236627,623...    28   5.9  

>04_04_0417 -
           25052305-25052398,25052583-25052672,25052740-25052905,
           25053547-25053647,25053735-25053775,25054170-25054181
          Length = 167

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 317 YKHATNFLKEYLKQHANSPKDVQPSGEGKKGSKTIIIQ 430
           Y+   N +  Y K+H+N P  + P    K+G   II Q
Sbjct: 98  YQRQVNLVAGYEKRHSNIPAHISPCFRVKEGDHVIIGQ 135


>09_03_0038 +
           11790075-11790302,11790397-11790542,11790915-11791017,
           11791148-11791334,11791466-11791559,11791702-11791855,
           11792189-11792305,11792695-11792808,11793629-11793811,
           11794209-11794494,11794592-11794713,11794746-11794802,
           11794803-11794900,11795036-11795213,11795355-11795455,
           11795530-11795629,11795751-11795828,11796785-11796862,
           11796956-11797138
          Length = 868

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +2

Query: 263 RIHGNVGKKPYNTFTLDIYKHATNFLKEYLKQHANSPK 376
           R++  VGK     F LDI   + NF K+Y       PK
Sbjct: 226 RVYTQVGKSSQGKFALDIGVKSLNFYKDYFDTPYPLPK 263


>08_01_0706 -
           6235817-6235988,6236028-6236338,6236421-6236627,
           6236718-6236889,6236994-6237249,6238015-6238073,
           6238693-6238782,6238869-6239013,6239598-6239712,
           6240690-6240701
          Length = 512

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +2

Query: 317 YKHATNFLKEYLKQHANSPKDVQPSGEGKKGSKTIIIQ 430
           Y H     + Y K+H+N P  + P    K+G   II Q
Sbjct: 82  YLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQ 119


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,048,852
Number of Sequences: 37544
Number of extensions: 301457
Number of successful extensions: 663
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)