Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30184
         (565 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57674| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.017
SB_49670| Best HMM Match : TIR (HMM E-Value=1.2)                       28   4.6  
SB_51437| Best HMM Match : RWD (HMM E-Value=1.3e-05)                   28   6.1  
SB_10193| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.0  
SB_48845| Best HMM Match : CheW (HMM E-Value=1.5)                      27   8.0  
SB_3169| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.0  

>SB_57674| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 424

 Score = 36.3 bits (80), Expect = 0.017
 Identities = 19/77 (24%), Positives = 37/77 (48%)
 Frame = +3

Query: 30  NIAELTKSEHDMYLMGITMASLANPAETSRHKVRRRLRACYVYQGRKVCLEAFLYLENVT 209
           N  ELT +E D+ ++    + ++N     + ++   LR       R VC   F     ++
Sbjct: 290 NALELTHNELDLVILANIHSCISNHNIGEKRRIACNLRIL----SRPVCKATFFNFYGIS 345

Query: 210 HYQLKRIRQHVMTHGLH 260
             + KR+++H  THG++
Sbjct: 346 LSRFKRLKEHYQTHGIY 362



 Score = 29.9 bits (64), Expect = 1.5
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 260 PRIHGNVGKKPYNTFTLDIYKHATNFLKEYLKQHA 364
           PR HGN  ++P+N       +    FL  Y++++A
Sbjct: 363 PREHGNKKRRPWNAIPFTTVEEIKTFLTNYVEENA 397


>SB_49670| Best HMM Match : TIR (HMM E-Value=1.2)
          Length = 512

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +2

Query: 278 VGKKPYNTFTLDIYKHATNFLKEYLKQHANSPKDVQPSGEGKKGSKTIII 427
           +GK  Y++F  D+ K  T  + + LKQ+       Q S    K SKTI +
Sbjct: 163 LGKSQYSSFLKDVIKDRTVAIGKSLKQNKLPLFRKQASRNKSKQSKTIFL 212


>SB_51437| Best HMM Match : RWD (HMM E-Value=1.3e-05)
          Length = 359

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +2

Query: 338 LKEYLKQHANSPKDVQPSGEGKKGSKTIIIQGDSRKHLFEAYKEYGEIL 484
           LKEYLK+H     DV  SG+  K     +I   S K  ++     G++L
Sbjct: 183 LKEYLKRHKTCLVDVDSSGKPCKEKMMNVIFQTSWKAEYKIKSTRGDLL 231


>SB_10193| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 831

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +2

Query: 278 VGKKPYNTFTLDIYKHATNFLKEYLKQHANSPKDVQPSGEGKKGSKTI 421
           +GK  Y++F  D+ K  T  + + LKQ+       Q S    K SKTI
Sbjct: 427 LGKSQYSSFLKDVIKDRTVAIGKSLKQNKLPLFRKQASRNKSKQSKTI 474


>SB_48845| Best HMM Match : CheW (HMM E-Value=1.5)
          Length = 368

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +2

Query: 278 VGKKPYNTFTLDIYKHATNFLKEYLKQHANSPKDVQPSGEGKKGSKTI 421
           +GK  Y++F  D+ K  T  + + LKQ+       Q S    K SKTI
Sbjct: 216 LGKSQYSSFLKDVIKDRTVAIGKSLKQNKLPLFRKQASRNKSKQSKTI 263


>SB_3169| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1096

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +2

Query: 278 VGKKPYNTFTLDIYKHATNFLKEYLKQHANSPKDVQPSGEGKKGSKTI 421
           +GK  Y++F  D+ K  T  + + LKQ+       Q S    K SKTI
Sbjct: 576 LGKSQYSSFLKDVIKDRTVAIGKSLKQNKLPLFRKQASRNKSKQSKTI 623


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,921,820
Number of Sequences: 59808
Number of extensions: 363894
Number of successful extensions: 769
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)