Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30184
         (565 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L23645-7|AAK26132.2|  157|Caenorhabditis elegans Hypothetical pr...    31   0.76 
Z73978-2|CAA98292.2|  728|Caenorhabditis elegans Hypothetical pr...    27   7.0  
AF016682-5|AAB66184.1|  409|Caenorhabditis elegans Hypothetical ...    27   9.3  

>L23645-7|AAK26132.2|  157|Caenorhabditis elegans Hypothetical
           protein F54F2.7 protein.
          Length = 157

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 18/59 (30%), Positives = 32/59 (54%)
 Frame = +2

Query: 353 KQHANSPKDVQPSGEGKKGSKTIIIQGDSRKHLFEAYKEYGEILEPGVKLMGIQPSERL 529
           K+H       Q SG+GKKG+  +I+Q DS+   F+       ++  GV+   ++ ++RL
Sbjct: 56  KKHGADRSTNQVSGKGKKGA--LILQPDSKLCTFKCKDGSEHVVRAGVRGTLVEMNDRL 112


>Z73978-2|CAA98292.2|  728|Caenorhabditis elegans Hypothetical
           protein ZC302.1 protein.
          Length = 728

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +3

Query: 45  TKSEHDMYLMGITMASLANPAETSRHKVRRRLRACYVYQGRKVCLE 182
           T+ + DM L+G  +    NP+   +H+V + LR  Y   G  + LE
Sbjct: 101 TEQKVDMILLGGDLFHENNPSREVQHRVTQLLRQ-YCLNGNPIALE 145


>AF016682-5|AAB66184.1|  409|Caenorhabditis elegans Hypothetical
           protein T07D3.4 protein.
          Length = 409

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = +2

Query: 224 TYPATCDDPWFAPRIHGNVGKKPYNTFTLDIYKHATNFLKEYLKQHAN---SPKDVQPSG 394
           TYP    DPW A  +HG++     N     + ++  ++ K++L        S K+VQ +G
Sbjct: 317 TYPIY--DPWCAADLHGHIFWVSCNPLEKILAEYGEDWKKDHLSSEYRWNYSQKNVQTNG 374

Query: 395 E 397
           +
Sbjct: 375 K 375


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,215,527
Number of Sequences: 27780
Number of extensions: 279413
Number of successful extensions: 626
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)