Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30184
         (565 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   1.6  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.1  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.1  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.1  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.1  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.1  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   2.1  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   2.1  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   3.7  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    22   4.9  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   8.6  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 322 TCNEFP*GIFEATCK 366
           TC   P GIF++TCK
Sbjct: 135 TCLYVPPGIFKSTCK 149


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 313 HIQTCNEFP*GIFEATCK 366
           H  +C   P GIF++TCK
Sbjct: 95  HDGSCLYVPPGIFKSTCK 112



 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 198 QDIRMLPNKLFYLDI 154
           +D+R+ PNKL+  DI
Sbjct: 59  KDLRITPNKLWKPDI 73


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 313 HIQTCNEFP*GIFEATCK 366
           H  +C   P GIF++TCK
Sbjct: 95  HDGSCLYVPPGIFKSTCK 112



 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 198 QDIRMLPNKLFYLDI 154
           +D+R+ PNKL+  DI
Sbjct: 59  KDLRITPNKLWKPDI 73


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 313 HIQTCNEFP*GIFEATCK 366
           H  +C   P GIF++TCK
Sbjct: 95  HDGSCLYVPPGIFKSTCK 112



 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 198 QDIRMLPNKLFYLDI 154
           +D+R+ PNKL+  DI
Sbjct: 59  KDLRITPNKLWKPDI 73


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 313 HIQTCNEFP*GIFEATCK 366
           H  +C   P GIF++TCK
Sbjct: 95  HDGSCLYVPPGIFKSTCK 112



 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 198 QDIRMLPNKLFYLDI 154
           +D+R+ PNKL+  DI
Sbjct: 59  KDLRITPNKLWKPDI 73


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 313 HIQTCNEFP*GIFEATCK 366
           H  +C   P GIF++TCK
Sbjct: 95  HNGSCLYVPPGIFKSTCK 112



 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 198 QDIRMLPNKLFYLDI 154
           +D+R+ PNKL+  DI
Sbjct: 59  KDLRITPNKLWKPDI 73


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 313 HIQTCNEFP*GIFEATCK 366
           H  +C   P GIF++TCK
Sbjct: 163 HNGSCLYVPPGIFKSTCK 180



 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 198 QDIRMLPNKLFYLDI 154
           +D+R+ PNKL+  DI
Sbjct: 127 KDLRITPNKLWKPDI 141


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 313 HIQTCNEFP*GIFEATCK 366
           H  +C   P GIF++TCK
Sbjct: 163 HNGSCLYVPPGIFKSTCK 180



 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 198 QDIRMLPNKLFYLDI 154
           +D+R+ PNKL+  DI
Sbjct: 127 KDLRITPNKLWKPDI 141


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 14/61 (22%), Positives = 26/61 (42%)
 Frame = +3

Query: 33  IAELTKSEHDMYLMGITMASLANPAETSRHKVRRRLRACYVYQGRKVCLEAFLYLENVTH 212
           I ++   E+ M L G +  S   P        + R+RA  + +  +V       + NVT+
Sbjct: 361 IFDIATKENAMLLSGRSQKSTTGPPPGPTPAQKARMRALNIDRVSRVFFPFLFAVLNVTY 420

Query: 213 Y 215
           +
Sbjct: 421 W 421


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 313 HIQTCNEFP*GIFEATCK 366
           H  +C   P GIF +TCK
Sbjct: 95  HDGSCLYVPPGIFGSTCK 112



 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 198 QDIRMLPNKLFYLDI 154
           +D+R+ PNKL+  DI
Sbjct: 59  KDLRITPNKLWKPDI 73


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +2

Query: 23  PPQHS*THKKRTRHVLDGHHN 85
           P  +S T ++   H LD  HN
Sbjct: 195 PSVYSKTRRRALEHTLDRFHN 215


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,847
Number of Sequences: 438
Number of extensions: 3493
Number of successful extensions: 20
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)