Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30184
         (565 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g52400.1 68414.m05913 glycosyl hydrolase family 1 protein / b...    30   0.93 
At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C)            28   3.7  
At2g24130.1 68415.m02883 leucine-rich repeat transmembrane prote...    28   3.7  
At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B) ribo...    28   5.0  
At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A)            28   5.0  
At4g33985.1 68417.m04822 expressed protein                             27   6.5  

>At1g52400.1 68414.m05913 glycosyl hydrolase family 1 protein /
           beta-glucosidase, putative (BG1) contains Pfam PF00232 :
           Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233:
           6-phospho-beta-galactosidase; identical to GI:6651430
           from [Arabidopsis thaliana]
          Length = 528

 Score = 30.3 bits (65), Expect = 0.93
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +2

Query: 251 WFAPRIHG-NVGKKPYNTFTLDIYKHATNFLKEYLKQHANSPK 376
           W +  + G  +G KP+N   LD+Y     +L +Y+K +   P+
Sbjct: 376 WDSKSVDGYKIGSKPFNG-KLDVYSKGLRYLLKYIKDNYGDPE 417


>At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C)
          Length = 159

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +2

Query: 317 YKHATNFLKEYLKQHANSPKDVQPSGEGKKGSKTIIIQ 430
           Y H     + Y K+H+N P  V P    K+G   II Q
Sbjct: 91  YLHFVKKYQRYEKRHSNIPAHVSPCFRVKEGDHVIIGQ 128


>At2g24130.1 68415.m02883 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 980

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
 Frame = -1

Query: 247 VITCCRIRFN**CVTFSRYKNASKQTFLP*YT*QALNL--LLTLCREVSAGFAKLAIVMP 74
           + TC +  FN   +      +  +  +   Y+ + L+L  L+ +C +V+ G A L    P
Sbjct: 722 ITTCSKPGFNALVLPLMPNGSLERHLYPGEYSSKNLDLIQLVNICSDVAEGIAYLHHYSP 781

Query: 73  IKYMSCSLFVSSAML 29
           +K + C L  S+ +L
Sbjct: 782 VKVVHCDLKPSNILL 796


>At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B)
           ribosomal protein S11, Arabidopsis thaliana,PIR2:C35542
          Length = 159

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +2

Query: 317 YKHATNFLKEYLKQHANSPKDVQPSGEGKKGSKTIIIQ 430
           Y H     + Y K+H+N P  V P    K+G +  I Q
Sbjct: 91  YLHFVKKYRRYEKRHSNIPAHVSPCFRVKEGDRVTIGQ 128


>At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A)
          Length = 160

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +2

Query: 317 YKHATNFLKEYLKQHANSPKDVQPSGEGKKGSKTIIIQ 430
           Y H     + Y K+H+N P  V P    K+G   II Q
Sbjct: 91  YLHFVKKYQRYEKRHSNIPAHVSPCFRVKEGDHIIIGQ 128


>At4g33985.1 68417.m04822 expressed protein
          Length = 154

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/52 (25%), Positives = 25/52 (48%)
 Frame = +2

Query: 365 NSPKDVQPSGEGKKGSKTIIIQGDSRKHLFEAYKEYGEILEPGVKLMGIQPS 520
           +S   +   GE    S TI+ QGD  + +    K++ +++   VK    +P+
Sbjct: 103 SSLSSIASEGENSNSSTTIVDQGDDPETMKLRLKQWAQVVACSVKQFSGEPN 154


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,404,877
Number of Sequences: 28952
Number of extensions: 255121
Number of successful extensions: 545
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)