Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30183
         (547 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein S16|Sc...    99   2e-22
SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein S16|Schizosa...    99   2e-22
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    27   1.8  
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    27   1.8  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    25   7.3  
SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr ...    25   9.6  
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    25   9.6  

>SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score =   99 bits (238), Expect = 2e-22
 Identities = 45/80 (56%), Positives = 61/80 (76%)
 Frame = +1

Query: 16  IQAVQVXGRXKTATAVAYCKRGHGMLRVNGRPLXLXEPXLLQYKLQEPILLLGKEKFSMX 195
           +Q+VQ  G+   ATAVA+CK G G+++VNG PL L +P +L+ K+ EPIL+ G +KF+  
Sbjct: 1   MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60

Query: 196 DIRVTVKGGGHVAQVYAIRQ 255
           DIRV V GGGHV+Q+YAIRQ
Sbjct: 61  DIRVRVSGGGHVSQIYAIRQ 80



 Score = 98.3 bits (234), Expect = 6e-22
 Identities = 45/60 (75%), Positives = 52/60 (86%)
 Frame = +3

Query: 255 AISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 434
           AISKA++A+YQK+VDE SK E+K  L+ YDR+LLVADPRR EPKKFGG GARAR QKSYR
Sbjct: 81  AISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRRMEPKKFGGHGARARQQKSYR 140


>SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 140

 Score =   99 bits (238), Expect = 2e-22
 Identities = 45/80 (56%), Positives = 61/80 (76%)
 Frame = +1

Query: 16  IQAVQVXGRXKTATAVAYCKRGHGMLRVNGRPLXLXEPXLLQYKLQEPILLLGKEKFSMX 195
           +Q+VQ  G+   ATAVA+CK G G+++VNG PL L +P +L+ K+ EPIL+ G +KF+  
Sbjct: 1   MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60

Query: 196 DIRVTVKGGGHVAQVYAIRQ 255
           DIRV V GGGHV+Q+YAIRQ
Sbjct: 61  DIRVRVSGGGHVSQIYAIRQ 80



 Score = 98.3 bits (234), Expect = 6e-22
 Identities = 45/60 (75%), Positives = 52/60 (86%)
 Frame = +3

Query: 255 AISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 434
           AISKA++A+YQK+VDE SK E+K  L+ YDR+LLVADPRR EPKKFGG GARAR QKSYR
Sbjct: 81  AISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRRMEPKKFGGHGARARQQKSYR 140


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = +2

Query: 107 VHXTWXSPXCCSTNFRNLSFCSARKNSLWXTSE*QSRXVVM*H-KFTLSDSYFEGSDRLL 283
           V   W SP   S N+           +    S+ +   V++ H KF   D+Y +G+  ++
Sbjct: 731 VSPPWNSP---SNNYTESDLELGIVRTFEFVSQLRRMAVIVKHGKFKKMDAYVKGAPEIM 787

Query: 284 PEICR 298
           P IC+
Sbjct: 788 PSICK 792


>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 415 DTRNLTVKPSTKPSGGIVAAVCCH 486
           D  N+ VKP+  P+  +   +CCH
Sbjct: 566 DRFNVIVKPALNPAERMTVRICCH 589


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1154

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 103  RLHAAFHDHACNTQLRWRFS 44
            RLH+ F++H C + L+  FS
Sbjct: 1062 RLHSLFNEHFCKSNLQLFFS 1081


>SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
 Frame = +2

Query: 233 HKFTLS---DSYFEGSDRLLPEICRRSLKEGNQRHPS 334
           H  TLS   + YF+G D   PE C        QRH S
Sbjct: 35  HLGTLSPYHEPYFDGLDSAFPETCEIQQVHLLQRHGS 71


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -2

Query: 255 LSDSVNLCYMTTXLDCHSDVXH-REFFLAEQ 166
           LS+  N CYM + L C +     R+FF +++
Sbjct: 313 LSNLGNTCYMNSALQCLTHTRELRDFFTSDE 343


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,016,856
Number of Sequences: 5004
Number of extensions: 34761
Number of successful extensions: 90
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)