Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30183
(547 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0152 - 1168928-1169377 113 9e-26
11_01_0155 - 1287003-1287452 113 9e-26
06_03_0062 + 16116893-16117029,16117472-16117760 30 1.4
07_03_1553 - 27653473-27653490,27653634-27653673,27653852-276539... 29 2.4
07_03_0227 - 15398371-15398925 29 2.4
01_06_0683 - 31173763-31174635,31175146-31175436 29 2.4
05_03_0424 - 13795721-13795900,13796134-13796202,13796260-137963... 29 3.2
02_05_0156 + 26341904-26342801,26343469-26344148 27 7.4
05_03_0458 + 14280953-14281866,14281964-14282912 27 9.8
>12_01_0152 - 1168928-1169377
Length = 149
Score = 113 bits (272), Expect = 9e-26
Identities = 52/74 (70%), Positives = 61/74 (82%)
Frame = +3
Query: 213 QGXWSCSTSLRYQTAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKF 392
+G S + AI+KAL+A+YQKYVDEASKKE+KDI +YDR+LLVADPRRCEPKKF
Sbjct: 76 RGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKF 135
Query: 393 GGPGARARYQKSYR 434
GG GARAR+QKSYR
Sbjct: 136 GGRGARARFQKSYR 149
Score = 95.1 bits (226), Expect = 3e-20
Identities = 43/83 (51%), Positives = 57/83 (68%)
Frame = +1
Query: 7 REPIQAVQVXGRXKTATAVAYCKRGHGMLRVNGRPLXLXEPXLLQYKLQEPILLLGKEKF 186
R P VQ GR KTA AV+YCK G G+++VNG P+ L P +L+ K EPILL G+ +F
Sbjct: 7 RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRF 66
Query: 187 SMXDIRVTVKGGGHVAQVYAIRQ 255
D+R+ V+GGG +Q+YAIRQ
Sbjct: 67 KDIDMRIRVRGGGKTSQIYAIRQ 89
>11_01_0155 - 1287003-1287452
Length = 149
Score = 113 bits (272), Expect = 9e-26
Identities = 52/74 (70%), Positives = 61/74 (82%)
Frame = +3
Query: 213 QGXWSCSTSLRYQTAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKF 392
+G S + AI+KAL+A+YQKYVDEASKKE+KDI +YDR+LLVADPRRCEPKKF
Sbjct: 76 RGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKF 135
Query: 393 GGPGARARYQKSYR 434
GG GARAR+QKSYR
Sbjct: 136 GGRGARARFQKSYR 149
Score = 95.1 bits (226), Expect = 3e-20
Identities = 43/83 (51%), Positives = 57/83 (68%)
Frame = +1
Query: 7 REPIQAVQVXGRXKTATAVAYCKRGHGMLRVNGRPLXLXEPXLLQYKLQEPILLLGKEKF 186
R P VQ GR KTA AV+YCK G G+++VNG P+ L P +L+ K EPILL G+ +F
Sbjct: 7 RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRF 66
Query: 187 SMXDIRVTVKGGGHVAQVYAIRQ 255
D+R+ V+GGG +Q+YAIRQ
Sbjct: 67 KDIDMRIRVRGGGKTSQIYAIRQ 89
>06_03_0062 + 16116893-16117029,16117472-16117760
Length = 141
Score = 29.9 bits (64), Expect = 1.4
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -1
Query: 112 MDARLHAAFHDHA--CNTQLRWRFSXVRILGRPGW 14
+DARL A +HA N + RWR LG+ GW
Sbjct: 26 LDARLWAVESEHARVVNPEQRWRARSTGWLGKKGW 60
>07_03_1553 -
27653473-27653490,27653634-27653673,27653852-27653939,
27654150-27654230,27654644-27655084,27655692-27656325
Length = 433
Score = 29.1 bits (62), Expect = 2.4
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = +1
Query: 37 GRXKTATAVAYCKRGHGMLRVNGRPLXLXEPXL-LQYKLQEPILLLGKEKFSMXDIRVTV 213
G+ K + A + + G G VN + P L + L P + + D+ TV
Sbjct: 295 GKRKCSIARVWIQPGDGKFIVNDKQFDSYFPILDHRADLLRPFTVT--KTLGRWDVTCTV 352
Query: 214 KGGGHVAQVYAIR 252
KGGG QV AIR
Sbjct: 353 KGGGVSGQVGAIR 365
>07_03_0227 - 15398371-15398925
Length = 184
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = -1
Query: 157 VPEVCTAAVWAXPSXMDARLHAAFH--DHACNTQLRWRF 47
+P +C A W P+ A H FH C+ + RW +
Sbjct: 23 LPPLCRAPWWPSPASSAAATHLRFHPRHRRCHPRRRWSY 61
>01_06_0683 - 31173763-31174635,31175146-31175436
Length = 387
Score = 29.1 bits (62), Expect = 2.4
Identities = 18/62 (29%), Positives = 25/62 (40%)
Frame = +2
Query: 14 PSRPSKYXDVRKPPPQLRIASVVMECCV*TGVHXTWXSPXCCSTNFRNLSFCSARKNSLW 193
PS+P+K D PP Q +++SV VH +P + R C K W
Sbjct: 224 PSKPAKKKDAPAPPAQAQLSSV--------PVHSGGSAPAAAAGEGRRCLHCETDKTPQW 275
Query: 194 XT 199
T
Sbjct: 276 RT 277
>05_03_0424 -
13795721-13795900,13796134-13796202,13796260-13796385,
13797224-13798166,13798263-13799248
Length = 767
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/57 (24%), Positives = 27/57 (47%)
Frame = +3
Query: 174 QGKILYGRHQSDSQGXWSCSTSLRYQTAISKALIAFYQKYVDEASKKEIKDILVQYD 344
QG ++ GR + WS S + + + AL+ Y+K + A + + D ++ D
Sbjct: 267 QGDLVLGRWVEE----WSWSARMEMDSLVGSALLGMYEKCGEIAEARRVFDTIIDKD 319
>02_05_0156 + 26341904-26342801,26343469-26344148
Length = 525
Score = 27.5 bits (58), Expect = 7.4
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -2
Query: 453 WFR*RLNGKISGIWHGH 403
WFR R G I GIW+ H
Sbjct: 155 WFRGRRRGLIMGIWNAH 171
>05_03_0458 + 14280953-14281866,14281964-14282912
Length = 620
Score = 27.1 bits (57), Expect = 9.8
Identities = 13/57 (22%), Positives = 27/57 (47%)
Frame = +3
Query: 174 QGKILYGRHQSDSQGXWSCSTSLRYQTAISKALIAFYQKYVDEASKKEIKDILVQYD 344
+G ++ GR + WS S + + + AL+ Y+K + A + + D ++ D
Sbjct: 243 EGDLVLGRWVEE----WSKSAGMETDSLVGSALVGMYEKCGEIAEARRVFDSIIDKD 295
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,356,066
Number of Sequences: 37544
Number of extensions: 263772
Number of successful extensions: 627
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -