Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30183
         (547 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C)           113   5e-26
At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same...   113   5e-26
At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) simi...   113   1e-25
At3g49080.1 68416.m05362 ribosomal protein S9 family protein con...    36   0.023
At2g46560.1 68415.m05808 transducin family protein / WD-40 repea...    27   6.2  
At5g48630.1 68418.m06014 cyclin family protein similar to SP|P55...    27   8.2  
At5g47360.1 68418.m05837 pentatricopeptide (PPR) repeat-containi...    27   8.2  

>At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C)
          Length = 146

 Score =  113 bits (273), Expect = 5e-26
 Identities = 51/60 (85%), Positives = 58/60 (96%)
 Frame = +3

Query: 255 AISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 434
           +I+KAL+A+YQKYVDE SKKEIKDILV+YDR+LLVADPRRCEPKKFGG GAR+RYQKSYR
Sbjct: 87  SIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARSRYQKSYR 146



 Score =  101 bits (241), Expect = 4e-22
 Identities = 43/85 (50%), Positives = 64/85 (75%)
 Frame = +1

Query: 1   ARREPIQAVQVXGRXKTATAVAYCKRGHGMLRVNGRPLXLXEPXLLQYKLQEPILLLGKE 180
           A +   ++VQ  GR KTA AV +CKRG G++++NG P+ L +P +L++K+ EP+LLLGK 
Sbjct: 2   ATQPATESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKH 61

Query: 181 KFSMXDIRVTVKGGGHVAQVYAIRQ 255
           +F+  ++R+ V GGGH +QVYAIRQ
Sbjct: 62  RFAGVNMRIRVNGGGHTSQVYAIRQ 86


>At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same as
           GB:Q42340
          Length = 146

 Score =  113 bits (273), Expect = 5e-26
 Identities = 51/60 (85%), Positives = 58/60 (96%)
 Frame = +3

Query: 255 AISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 434
           +I+KAL+A+YQKYVDE SKKEIKDILV+YDR+LLVADPRRCEPKKFGG GAR+RYQKSYR
Sbjct: 87  SIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARSRYQKSYR 146



 Score =  101 bits (242), Expect = 3e-22
 Identities = 44/85 (51%), Positives = 64/85 (75%)
 Frame = +1

Query: 1   ARREPIQAVQVXGRXKTATAVAYCKRGHGMLRVNGRPLXLXEPXLLQYKLQEPILLLGKE 180
           A +   ++VQ  GR KTA AV +CKRG G++++NG P+ L +P +L++K+ EPILLLGK 
Sbjct: 2   ATQPATESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKH 61

Query: 181 KFSMXDIRVTVKGGGHVAQVYAIRQ 255
           +F+  ++R+ V GGGH +QVYAIRQ
Sbjct: 62  RFAGVNMRIRVNGGGHTSQVYAIRQ 86


>At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) similar
           to 40S ribosomal protein S16 GB:AAD22696 [Arabidopsis
           thaliana]
          Length = 146

 Score =  113 bits (271), Expect = 1e-25
 Identities = 52/73 (71%), Positives = 62/73 (84%)
 Frame = +3

Query: 216 GXWSCSTSLRYQTAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFG 395
           G  + S     + +I+KAL+A+YQKYVDE SKKEIKDIL++YDR+LLVADPRRCE KKFG
Sbjct: 74  GGGNTSRVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILMRYDRTLLVADPRRCESKKFG 133

Query: 396 GPGARARYQKSYR 434
           GPGARAR+QKSYR
Sbjct: 134 GPGARARFQKSYR 146



 Score =  102 bits (244), Expect = 2e-22
 Identities = 43/79 (54%), Positives = 62/79 (78%)
 Frame = +1

Query: 19  QAVQVXGRXKTATAVAYCKRGHGMLRVNGRPLXLXEPXLLQYKLQEPILLLGKEKFSMXD 198
           ++VQ  GR KTATAV YCKRG GM+++NG P+ L +P +L++K+ EP+LLLGK +F+  D
Sbjct: 8   ESVQCFGRKKTATAVTYCKRGSGMIKLNGSPIELYQPEILRFKIFEPVLLLGKHRFAGVD 67

Query: 199 IRVTVKGGGHVAQVYAIRQ 255
           +R+   GGG+ ++VYAIRQ
Sbjct: 68  MRIRATGGGNTSRVYAIRQ 86


>At3g49080.1 68416.m05362 ribosomal protein S9 family protein
           contains Pfam profile PF00380: ribosomal protein S9
          Length = 430

 Score = 35.5 bits (78), Expect = 0.023
 Identities = 23/72 (31%), Positives = 35/72 (48%)
 Frame = +1

Query: 37  GRXKTATAVAYCKRGHGMLRVNGRPLXLXEPXLLQYKLQEPILLLGKEKFSMXDIRVTVK 216
           GR K + A  + + G G  +VN +   +  P +L ++      L   +     DI+ TVK
Sbjct: 310 GRRKCSIARVWIQPGEGKFQVNEKEFDVYFP-MLDHRAALLRPLAETKTLGRWDIKCTVK 368

Query: 217 GGGHVAQVYAIR 252
           GGG   QV AI+
Sbjct: 369 GGGTTGQVGAIQ 380


>At2g46560.1 68415.m05808 transducin family protein / WD-40 repeat
            family protein similar to CPY (GI:3096961) {Chironomus
            thummi}; contains Pfam PF00400: WD domain, G-beta repeat
            (8 copies, 3 weak)|9780477|gb|BE522499.1|BE522499
          Length = 2471

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +3

Query: 225  SCSTSLRYQTAISKALIAFYQKYVDEASKKEIKDILVQYDRSLL 356
            SC    R+Q  +  AL  F+Q++   AS      IL  Y+R LL
Sbjct: 1563 SCEKFSRFQHKLQTALEQFHQRFSLSASYLRNMMILSAYNRGLL 1606


>At5g48630.1 68418.m06014 cyclin family protein similar to SP|P55168
           Cyclin C {Gallus gallus}; contains Pfam profile PF00134:
           Cyclin, N-terminal domain
          Length = 253

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +3

Query: 249 QTAISKALIAFYQK--YVDEASKKEIKDIL 332
           ++ +   L+ FY K  Y DE  + EIKDIL
Sbjct: 99  ESVVHAKLLVFYMKKLYADEKFRYEIKDIL 128


>At5g47360.1 68418.m05837 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 477

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +3

Query: 234 TSLRYQTAISKALIAFYQKYVDEAS-KKEIKDILVQYDRSLLVADPRRCEPKKF 392
           ++LR+ T +S A   + Q     ++ +KE+    VQ D S +    RRC+P +F
Sbjct: 22  SALRFLTTVSAAERLYGQLQGCTSNLEKELASANVQLDSSCINEVLRRCDPNQF 75


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,935,117
Number of Sequences: 28952
Number of extensions: 193511
Number of successful extensions: 535
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)